9nvl

ATPase Hybrid F1 with the ancestral core domains Binding Dwell

Method: ELECTRON MICROSCOPY

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1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP synthase gamma chain

Bacillus sp. PS3

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 7	ATPase Hybrid F1 with the ancestral core domains Chain A × 3 ATPase Hybrid F1 with the ancestral core domains Chain D × 3 MAGNESIUM ION × 3 ADENOSINE-5'-TRIPHOSPHATE × 1 PHOSPHATE ION × 1 ADENOSINE-5'-DIPHOSPHATE × 2	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	A0A0M4TPJ7_BACP3
Isoform	—
PDB entities	3
Chains and sequence ranges	Author chain G； PDBConstruct 1–285； UniProt 1–285

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9nvl
Deposition date deposition_date	2025-03-20
Last revision last_revision	2025-11-05
Structure title title	ATPase Hybrid F1 with the ancestral core domains Binding Dwell
Keywords keywords	single particle, Ancestral ATPase, ELECTRON TRANSPORT; ELECTRON TRANSPORT
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9nvl__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9nvl__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9nvl__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	44.27 Å
Rg (electron density)	43.50 Å
Total Rg	43.89 Å
Atom count	24190
Residues	3109
Excluded volume	432340 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9nvl__assembly_1__model_1`	heptameric （7）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (7)

Entity 1 Entity 1 polymer

Description description	ATPase Hybrid F1 with the ancestral core domains Chain A
Molecular weight formula_weight	55987.8 kDa
Source method src_method	man
Copy count entity_count	3

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C
Atom count atom_count	24190

MSHHHHHHGSIRAEEISALIKQQIENYESQIQVSDVGTVIQVGDGIARAHGLDNVMSGELVEFANGVMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGEELIGRVVNALGQPIDGKGPINAKEFRPVERKAPGVVDRQPVKEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQDVICIYVAIGQKQSTVAQVVKTLEEHGAMEYTIVVAATASDPAALQYIAPYAGCAMGEYFRDKGKHALVVYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIYLESDLFYSGIRPAINVGLSVSRVGGAAQIKAMKQVAGKLRLDLAQYRELQAFAQFASDLDEATRAQLERGQRMTEILKQPQYSPMPVEKQVVIIYAGTNGYLDDIPVEKVKEFEDGFLEYIESKHPDILEEIREKKALDDELEEKLKKAIKEFKATFK

Source Source

Source organism organism	Bacillus sp. PS3
NCBI taxonomy ID ncbi_taxonomy_id	2334
Host organism host_organism	Escherichia coli

Entity 2 Entity 2 polymer

Description description	ATPase Hybrid F1 with the ancestral core domains Chain D
Molecular weight formula_weight	53888.6 kDa
Source method src_method	man
Copy count entity_count	3

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	D,E,F

MHHHHHHHHHHMTRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGPETLGRMFDVLGEPIDEKGPVKAKKRWPIHRPPPSLSEQSTEDEILETGIKVIDLLAPIPKGGKIGLFGGAGVGKTVLIMELIRNIAYEHKGFSVFAGVGERSREGNELWLEMKESGVLDNTVLVFGQMNEPPGARFRVALTGLTMAEYFRDEEGKDVLLFIDNIFRFAQAGSEVSALLGRMPSEVGYQPTLATEMAELQERITSTRRGSITSVQAIYVPADDLTDPAPATTFAHLDATIVLSRELAEKGIYPAVDPLQSTSRIMDPRIVSEEHYEVARRVREILQRYKDLQDIIAILGMEELSEEDKLIVQRARKIQRFLSQPFHVAEHFTGRPGKYVPIEDTIRGFKEILDGKLDDVPEQAFYMVGTIEEAVEKAKKMKKE

Source Source

Source organism organism	Bacillus sp. PS3
NCBI taxonomy ID ncbi_taxonomy_id	2334
Host organism host_organism	Escherichia coli

Entity 3 Entity 3 polymer

Description description	ATP synthase gamma chain
Molecular weight formula_weight	31865.6 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	G

MASLRDIKTRINATKKTSQITKAMEMVSTSKLNRAEQNAKSFVPYMEKIQEVVANVALGAGGASHPMLVSRPVKKTGYLVITSDRGLAGAYNSNVLRLVYQTIQKRHACPDEYAIIVIGRVGLSFFRKRNMPVILDITRLPDQPSFADIKEIARKTVGLFADGTFDELYMYYNHYVSAIQQEVTERKLLPLTDLAENKQRTVYEFEPSQEECLDVLLPQYAESLIYGALLDAKASEHAARMTAMKNATDNANELIRTLTLSYNRARQAAITQEITEIVAGANALQ

Source Source

Source organism organism	Bacillus sp. PS3
NCBI taxonomy ID ncbi_taxonomy_id	2334
Host organism host_organism	Escherichia coli

Entity 4 Entity 4 non-polymer

Description description	MAGNESIUM ION
Molecular weight formula_weight	24.3 kDa
Source method src_method	syn
Copy count entity_count	3

Entity 5 Entity 5 non-polymer

Description description	ADENOSINE-5'-TRIPHOSPHATE
Molecular weight formula_weight	507.2 kDa
Source method src_method	syn
Copy count entity_count	1

Entity 6 Entity 6 non-polymer

Description description	PHOSPHATE ION
Molecular weight formula_weight	95.0 kDa
Source method src_method	syn
Copy count entity_count	1

Entity 7 Entity 7 non-polymer

Description description	ADENOSINE-5'-DIPHOSPHATE
Molecular weight formula_weight	427.2 kDa
Source method src_method	syn
Copy count entity_count	2

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	2.46 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	191889

ATPase Hybrid F1 with the ancestral core domains Binding Dwell

1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP synthase gamma chain

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9nvl__assembly_1__model_1

9nvl__assembly_1__model_1 | I(q)

9nvl__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (7)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

Entity 4 Entity 4 non-polymer

Entity 5 Entity 5 non-polymer

Entity 6 Entity 6 non-polymer

Entity 7 Entity 7 non-polymer

7. Citations (1)

ATPase Hybrid F1 with the ancestral core domains Binding Dwell

1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP synthase gamma chain

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9nvl__assembly_1__model_1

9nvl__assembly_1__model_1 | I(q)

9nvl__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (7)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

Entity 4 Entity 4 non-polymer

Entity 5 Entity 5 non-polymer

Entity 6 Entity 6 non-polymer

Entity 7 Entity 7 non-polymer

7. Citations (1)