9od3

SIPV3-6B5 Complex

Method: ELECTRON MICROSCOPY Dmax: 113.3 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

VP1

OrganismNot specified

UniProt P03302

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain 1; UniProt 579–878 Chain 2; UniProt 70–340 Chain 3; UniProt 341–578 Chain 4; UniProt 2–69 Not recorded 6B5 Heavy Chain × 1 6B5 Light Chain × 1 PLM PALMITIC ACID × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 8 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.94 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 61 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name POLG_POL3L
Isoform
PDB entities 1, 2, 3, 4
Chains and sequence ranges Author chain 1; PDBConstruct 1–300; UniProt 579–878 Author chain 2; PDBConstruct 1–271; UniProt 70–340 Author chain 3; PDBConstruct 1–238; UniProt 341–578 Author chain 4; PDBConstruct 1–68; UniProt 2–69

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9od3

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9od3
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9od3
Deposition date deposition_date2025-04-25
Structure title titleSIPV3-6B5 Complex
Keywords keywordsVirus, Antibody, Complex; VIRUS
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier34.30
Radius of gyration Rg (electron density) rg_electron33.55
Forward intensity I(0) i0222666000.00
Molecular weight molecular_weight118630.0 kDa
Excluded volume excluded_volume147890 ų
Envelope volume envelope_volume198430 ų
Hydration-shell volume shell_volume48823 ų
Envelope diameter envelope_diameter120.9
Shell Rg shell_rg40.62
Envelope Rg envelope_rg33.71
Shape Rg shape_rg33.51
Total Rg total_rg34.20
Total atoms total_atoms16446
Residues n_residues1072
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax113.3
Rg (real space) rg_real34.25
Rg uncertainty (real space) rg_real_error0.76
I(0) (real space) i0_real2.2270e+08
I(0) uncertainty (real space) i0_real_error3.2180e+06
Rg (reciprocal space) rg_reciprocal34.29
I(0) (reciprocal space) i0_reciprocal222700000.0000
Solution quality estimate total_estimate0.6893
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary39.4
Skewness Skewness skewness0.294
Kurtosis Kurtosis kurtosis-0.377
Angular range angular_range— – 0.2300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha50690000.0000
Real-space data points n_real_points47
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.881; Stabil: 1.000; Sysdev: 0.122; Positv: 1.000; Valcen: 1.000; Smooth: 0.946

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

8. Citations (1)

9. Files and Curves (10)