9pug
Crystal Structure of N-nitrobenzyl Peptoid-modified Collagen Triple Helix (GPX)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9pug |
| deposition_date | 2025-07-30 |
| last_revision | 2026-04-08 |
| title | Crystal Structure of N-nitrobenzyl Peptoid-modified Collagen Triple Helix (GPX) |
| keywords | N-linked nitrobenzyl, peptoid, NyBNZ, N-BNZ, collagen, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 17.31 Å |
| rg_electron | 18.10 Å |
| i0 | 835786.00 |
| molecular_weight | 6052.0 kDa |
| excluded_volume | 7474 ų |
| envelope_volume | 8957 ų |
| shell_volume | 5778 ų |
| envelope_diameter | 68.9 Å |
| shell_rg | 19.07 Å |
| envelope_rg | 18.95 Å |
| shape_rg | 18.01 Å |
| total_rg | 18.55 Å |
| total_atoms | 794 |
| n_residues | 42 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 45.9 Å |
| rg_real | 15.62 Å |
| rg_real_error | 0.13 Å |
| i0_real | 7.9120e+05 |
| i0_real_error | 7.9570e+03 |
| rg_reciprocal | 17.85 Å |
| i0_reciprocal | 835800.0000 |
| total_estimate | 0.5877 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 10.3 Å |
| skewness | 0.408 |
| kurtosis | -0.807 |
| angular_range | — – 0.4600 Å−1 |
| current_alpha | 2.7210 |
| highest_alpha | 27370.0000 |
| n_real_points | 77 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.007; Oscil: 0.848; Stabil: 0.985; Sysdev: 0.000; Positv: 1.000; Valcen: 0.249; Smooth: 0.000 |