9pyj
Crystal Structure of ZETA_2-Apo
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9pyj |
| deposition_date | 2025-08-07 |
| title | Crystal Structure of ZETA_2-Apo |
| keywords | de novo protein, enzyme design, RFdiffusion2, zinc metallohydrolases; DE NOVO PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 26.84 Å |
| rg_electron | 25.96 Å |
| i0 | 51105200.00 |
| molecular_weight | 55777.0 kDa |
| excluded_volume | 70015 ų |
| envelope_volume | 89769 ų |
| shell_volume | 28828 ų |
| envelope_diameter | 85.1 Å |
| shell_rg | 33.15 Å |
| envelope_rg | 25.71 Å |
| shape_rg | 25.93 Å |
| total_rg | 26.89 Å |
| total_atoms | 7891 |
| n_residues | 488 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 80.6 Å |
| rg_real | 26.74 Å |
| rg_real_error | 0.39 Å |
| i0_real | 5.1110e+07 |
| i0_real_error | 6.8690e+05 |
| rg_reciprocal | 26.77 Å |
| i0_reciprocal | 51110000.0000 |
| total_estimate | 0.9152 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 34.1 Å |
| skewness | 0.164 |
| kurtosis | -0.630 |
| angular_range | — – 0.2950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 14850000.0000 |
| n_real_points | 60 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.982; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.947 |