9q3b
[21-6B G|A] 21 bp DNA assembly that propagates via blunt-end stacking with G stacking on A at the interface
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9q3b |
| deposition_date | 2025-08-18 |
| title | [21-6B G|A] 21 bp DNA assembly that propagates via blunt-end stacking with G stacking on A at the interface |
| keywords | dna, trigonal, tensegrity; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 20.59 Å |
| rg_electron | 20.88 Å |
| i0 | 8009750.00 |
| molecular_weight | 12892.0 kDa |
| excluded_volume | 12455 ų |
| envelope_volume | 19556 ų |
| shell_volume | 9563 ų |
| envelope_diameter | 71.6 Å |
| shell_rg | 23.34 Å |
| envelope_rg | 21.10 Å |
| shape_rg | 20.83 Å |
| total_rg | 21.23 Å |
| total_atoms | 855 |
| n_residues | 42 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 71.8 Å |
| rg_real | 21.72 Å |
| rg_real_error | 0.24 Å |
| i0_real | 8.0420e+06 |
| i0_real_error | 8.6860e+04 |
| rg_reciprocal | 20.93 Å |
| i0_reciprocal | 8009000.0000 |
| total_estimate | 0.5234 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 15.6 Å |
| skewness | 0.633 |
| kurtosis | -0.357 |
| angular_range | — – 0.3850 Å−1 |
| current_alpha | 7.1280 |
| highest_alpha | 637300.0000 |
| n_real_points | 70 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.587; Stabil: 0.920; Sysdev: 0.000; Positv: 1.000; Valcen: 0.216; Smooth: 0.072 |