9qbc
Crystal structure of Brachyspira hampsonii PadR
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qbc |
| deposition_date | 2025-03-02 |
| title | Crystal structure of Brachyspira hampsonii PadR |
| keywords | Transcriptional regulator, PadR family, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.70 Å |
| rg_electron | 15.66 Å |
| i0 | 3054360.00 |
| molecular_weight | 12335.0 kDa |
| excluded_volume | 15572 ų |
| envelope_volume | 19292 ų |
| shell_volume | 11355 ų |
| envelope_diameter | 68.9 Å |
| shell_rg | 20.27 Å |
| envelope_rg | 16.35 Å |
| shape_rg | 15.64 Å |
| total_rg | 16.75 Å |
| total_atoms | 1742 |
| n_residues | 105 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 41.8 Å |
| rg_real | 15.56 Å |
| rg_real_error | 0.05 Å |
| i0_real | 2.8910e+06 |
| i0_real_error | 2.3230e+04 |
| rg_reciprocal | 16.78 Å |
| i0_reciprocal | 3054000.0000 |
| total_estimate | 0.6879 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 19.5 Å |
| skewness | 0.120 |
| kurtosis | -0.455 |
| angular_range | — – 0.4750 Å−1 |
| current_alpha | 2.8690 |
| highest_alpha | 259600.0000 |
| n_real_points | 78 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.009; Oscil: 0.997; Stabil: 0.984; Sysdev: 0.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.000 |