9qbd
Crystal structure of Brachyspira hampsonii PadR with Leu88 replaced by 3-aminotyrosine
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qbd |
| deposition_date | 2025-03-02 |
| title | Crystal structure of Brachyspira hampsonii PadR with Leu88 replaced by 3-aminotyrosine |
| keywords | Transcriptional regulator, PadR family, unnatural amino acid, 3-aminotyrosine, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 21.99 Å |
| rg_electron | 20.87 Å |
| i0 | 10709800.00 |
| molecular_weight | 24945.0 kDa |
| excluded_volume | 31475 ų |
| envelope_volume | 37765 ų |
| shell_volume | 16340 ų |
| envelope_diameter | 80.5 Å |
| shell_rg | 25.96 Å |
| envelope_rg | 21.26 Å |
| shape_rg | 20.90 Å |
| total_rg | 21.55 Å |
| total_atoms | 3516 |
| n_residues | 209 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 80.9 Å |
| rg_real | 22.24 Å |
| rg_real_error | 0.76 Å |
| i0_real | 1.0710e+07 |
| i0_real_error | 1.6370e+05 |
| rg_reciprocal | 22.20 Å |
| i0_reciprocal | 10710000.0000 |
| total_estimate | 0.7884 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 21.7 Å |
| skewness | 0.616 |
| kurtosis | 0.007 |
| angular_range | — – 0.3600 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2468000.0000 |
| n_real_points | 68 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.577; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.549; Smooth: 0.964 |