9qtj
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qtj |
| deposition_date | 2025-04-09 |
| title | Structure of Oceanobacillus iheyensis group II intron domains D1-D6 |
| keywords | Protein-free RNA cryo-EM, Ribozyme, Metalloenzymes, Splicing, RNA; RNA |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 40.02 Å |
| rg_electron | 39.97 Å |
| i0 | 1021750000.00 |
| molecular_weight | 149660.0 kDa |
| excluded_volume | 139230 ų |
| envelope_volume | 239080 ų |
| shell_volume | 52013 ų |
| envelope_diameter | 141.7 Å |
| shell_rg | 43.73 Å |
| envelope_rg | 38.65 Å |
| shape_rg | 39.91 Å |
| total_rg | 40.18 Å |
| total_atoms | 9878 |
| n_residues | 461 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 132.9 Å |
| rg_real | 40.04 Å |
| rg_real_error | 1.11 Å |
| i0_real | 1.0220e+09 |
| i0_real_error | 1.8060e+07 |
| rg_reciprocal | 40.03 Å |
| i0_reciprocal | 1022000000.0000 |
| total_estimate | 0.8842 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 47.7 Å |
| skewness | 0.349 |
| kurtosis | -0.340 |
| angular_range | — – 0.1950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 31380000.0000 |
| n_real_points | 40 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.892; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.825 |