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9qyx

MINPP1 from Bacteroides thetaiotaomicron T30E mutant complex with myo-inositol hexakissulfate

Method: X-RAY DIFFRACTION D_max: 90.8 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9qyx
deposition_date	2025-04-22
last_revision	2025-05-14
title	MINPP1 from Bacteroides thetaiotaomicron T30E mutant complex with myo-inositol hexakissulfate
keywords	Histidine phosphatase, phytase, mutant, complex, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.02 Å
rg_electron	29.14 Å
i0	144349000.00
molecular_weight	94982.0 kDa
excluded_volume	118660 Å³
envelope_volume	142780 Å³
shell_volume	40023 Å³
envelope_diameter	94.5 Å
shell_rg	37.17 Å
envelope_rg	29.04 Å
shape_rg	29.13 Å
total_rg	29.90 Å
total_atoms	6698
n_residues	798
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	90.8 Å
rg_real	29.88 Å
rg_real_error	0.37 Å
i0_real	1.4430e+08
i0_real_error	2.1000e+06
rg_reciprocal	29.94 Å
i0_reciprocal	144400000.0000
total_estimate	0.9124
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	36.0 Å
skewness	0.139
kurtosis	-0.617
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0002
highest_alpha	28460000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.971; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.948

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Multiple inositol polyphosphate phosphatase 1
formula_weight	49231.4 kDa
ec_number	3.1.3.62,3.1.3.80
mutation	T30E
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	7516

MGSSHHHHHHSSGLVPRGSHMQTKIQKYAGEAMPYPNRTDSSITFRDGMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLNKSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFLLNPEQYLDKEAEEFVMALFSVAAILPDTSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDYQANFRFAHAETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFNE

Source

organism	Bacteroides thetaiotaomicron VPI-5482
ncbi_taxonomy_id	226186
host_organism	Escherichia coli BL21(DE3)

Entity 2 non-polymer

description	D-MYO-INOSITOL-HEXASULPHATE
formula_weight	660.5 kDa
src_method	syn
entity_count	4

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	656

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6. Citations (1)

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length_a	52.930 Å
length_b	118.580 Å
length_c	75.080 Å
angle_alpha	90.00 °
angle_beta	107.41 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	monoclinic

resolution	1.540 Å
resolution_low	50.510 Å
r_factor	0.1795
r_work	0.1785
r_free	0.1990

fit	/app/data/saxs_computation/qy/9qyx/9qyx.fit
pddf	/app/data/pr_computation/qy/9qyx/9qyx.pr.out
profile	/app/data/saxs_computation/qy/9qyx/9qyx.dat

MINPP1 from Bacteroides thetaiotaomicron T30E mutant complex with myo-inositol hexakissulfate

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction