9r1j
X-ray crystal structure of a de novo designed Nile red binder, sc-apCC-4-NR-1
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9r1j |
| deposition_date | 2025-04-27 |
| last_revision | 2026-05-06 |
| title | X-ray crystal structure of a de novo designed Nile red binder, sc-apCC-4-NR-1 |
| keywords | de novo, coiled-coils, DE NOVO PROTEIN; DE NOVO PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.88 Å |
| rg_electron | 15.97 Å |
| i0 | 3449430.00 |
| molecular_weight | 13724.0 kDa |
| excluded_volume | 17520 ų |
| envelope_volume | 20483 ų |
| shell_volume | 11686 ų |
| envelope_diameter | 55.2 Å |
| shell_rg | 20.34 Å |
| envelope_rg | 16.18 Å |
| shape_rg | 15.97 Å |
| total_rg | 16.86 Å |
| total_atoms | 1930 |
| n_residues | 132 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 56.8 Å |
| rg_real | 16.97 Å |
| rg_real_error | 0.38 Å |
| i0_real | 3.4490e+06 |
| i0_real_error | 4.1350e+04 |
| rg_reciprocal | 16.96 Å |
| i0_reciprocal | 3449000.0000 |
| total_estimate | 0.8268 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.4 Å |
| skewness | 0.508 |
| kurtosis | -0.224 |
| angular_range | — – 0.4700 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1528000.0000 |
| n_real_points | 77 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.634; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.911; Smooth: 0.931 |