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9re7

Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F134

Method: X-RAY DIFFRACTION D_max: 66.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9re7
deposition_date	2025-06-03
title	Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F134
keywords	serine-threonine kinase, small molecules, ligand binding, fragment-based drug discovery, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.58 Å
rg_electron	20.18 Å
i0	25205400.00
molecular_weight	39674.0 kDa
excluded_volume	50128 Å³
envelope_volume	57726 Å³
shell_volume	23420 Å³
envelope_diameter	68.7 Å
shell_rg	27.15 Å
envelope_rg	20.33 Å
shape_rg	20.15 Å
total_rg	21.20 Å
total_atoms	2800
n_residues	334
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	66.3 Å
rg_real	21.44 Å
rg_real_error	0.44 Å
i0_real	2.5210e+07
i0_real_error	3.0260e+05
rg_reciprocal	21.47 Å
i0_reciprocal	25210000.0000
total_estimate	0.8246
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.3 Å
skewness	0.163
kurtosis	-0.426
angular_range	— – 0.3700 Å⁻¹
current_alpha	0.0000
highest_alpha	5460000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.908; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	cAMP-dependent protein kinase catalytic subunit alpha
formula_weight	41113.8 kDa
ec_number	2.7.11.11
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3094

GHMGNAAAAKKGSEQESVKEFLAKAKEEFLKKWESPSQNTAQLDHFDRIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFTEF

Source

organism	Cricetulus griseus
common_name	Chinese hamster
ncbi_taxonomy_id	10029
host_organism	;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ;

Entity 2 non-polymer

description	2-[(3S)-pyrrolidin-3-yl]-1H-benzimidazole
formula_weight	187.2 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	DIMETHYL SULFOXIDE
formula_weight	78.1 kDa
src_method	syn
entity_count	7

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	187

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6. Citations (1)

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length_a	52.049 Å
length_b	71.307 Å
length_c	97.521 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	orthorhombic

resolution	1.460 Å
resolution_low	24.380 Å
r_factor	0.1561
r_work	0.1547
r_free	0.1827

fit	/app/data/saxs_computation/re/9re7/9re7.fit
pddf	/app/data/pr_computation/re/9re7/9re7.pr.out
profile	/app/data/saxs_computation/re/9re7/9re7.dat

Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F134

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction