← Back to search

9shh

ATP-bound human mitochondrial Hsp60-Hsp10 bullet complex (C7)

Method: ELECTRON MICROSCOPY D_max: 196.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9shh
deposition_date	2025-08-27
title	ATP-bound human mitochondrial Hsp60-Hsp10 bullet complex (C7)
keywords	mitochondrial, C7-symmetry, CHAPERONE; CHAPERONE
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	68.30 Å
rg_electron	68.06 Å
i0	10209000000.00
molecular_weight	867530.0 kDa
excluded_volume	1093400 Å³
envelope_volume	1871800 Å³
shell_volume	220340 Å³
envelope_diameter	212.2 Å
shell_rg	78.07 Å
envelope_rg	64.65 Å
shape_rg	68.11 Å
total_rg	68.03 Å
total_atoms	60732
n_residues	8078
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	196.4 Å
rg_real	68.03 Å
rg_real_error	0.73 Å
i0_real	1.0210e+10
i0_real_error	1.6830e+08
rg_reciprocal	69.11 Å
i0_reciprocal	10230000000.0000
total_estimate	0.8280
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	93.9 Å
skewness	0.135
kurtosis	-0.272
angular_range	— – 0.1150 Å⁻¹
current_alpha	0.0009
highest_alpha	3009000000.0000
n_real_points	24
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.909; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.935; Smooth: 0.097

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (6)

Entity 1 polymer

description	60 kDa heat shock protein, mitochondrial
formula_weight	56134.4 kDa
ec_number	5.6.1.7
src_method	man
entity_count	14

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N
atom_count	63040

GSAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 polymer

description	10 kDa heat shock protein, mitochondrial
formula_weight	10946.7 kDa
src_method	man
entity_count	7

Polymer

type	polypeptide(L)
strand_id	a,b,c,d,e,f,g

MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 3 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	14

Entity 4 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	14

Entity 5 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	14

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	2308

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	2.11 Å
resolution_method	—
num_particles	575042

fit	/app/data/saxs_computation/sh/9shh/9shh.fit
pddf	/app/data/pr_computation/sh/9shh/9shh.pr.out
profile	/app/data/saxs_computation/sh/9shh/9shh.dat

ATP-bound human mitochondrial Hsp60-Hsp10 bullet complex (C7)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)