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9shi

ATP-bound human mitochondrial Hsp60-Hsp10 half-football complex (C7)

Method: ELECTRON MICROSCOPY D_max: 142.2 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9shi
deposition_date	2025-08-27
title	ATP-bound human mitochondrial Hsp60-Hsp10 half-football complex (C7)
keywords	mitochondrial, C7-symmetry, CHAPERONE; CHAPERONE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	58.12 Å
rg_electron	57.34 Å
i0	3054740000.00
molecular_weight	471270.0 kDa
excluded_volume	594590 Å³
envelope_volume	1020600 Å³
shell_volume	147250 Å³
envelope_diameter	155.9 Å
shell_rg	65.82 Å
envelope_rg	51.93 Å
shape_rg	57.32 Å
total_rg	57.62 Å
total_atoms	33012
n_residues	4389
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	142.2 Å
rg_real	57.51 Å
rg_real_error	0.38 Å
i0_real	3.0550e+09
i0_real_error	4.5990e+07
rg_reciprocal	58.62 Å
i0_reciprocal	3060000000.0000
total_estimate	0.6119
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	89.5 Å
skewness	-0.306
kurtosis	-0.645
angular_range	— – 0.1350 Å⁻¹
current_alpha	0.0002
highest_alpha	186300000.0000
n_real_points	28
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.974; Stabil: 1.000; Sysdev: 0.009; Positv: 1.000; Valcen: 0.999; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	60 kDa heat shock protein, mitochondrial
formula_weight	56134.4 kDa
ec_number	5.6.1.7
src_method	man
entity_count	7

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G
atom_count	34531

GSAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 polymer

description	10 kDa heat shock protein, mitochondrial
formula_weight	10946.7 kDa
src_method	man
entity_count	7

Polymer

type	polypeptide(L)
strand_id	a,b,c,d,e,f,g

MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli 0.1288

Entity 3 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	7

Entity 4 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	7

Entity 5 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	7

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	1519

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	2.19 Å
resolution_method	—
num_particles	992971

fit	/app/data/saxs_computation/sh/9shi/9shi.fit
pddf	/app/data/pr_computation/sh/9shi/9shi.pr.out
profile	/app/data/saxs_computation/sh/9shi/9shi.dat

ATP-bound human mitochondrial Hsp60-Hsp10 half-football complex (C7)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)