← Back to search

9shj

ATP-bound human mitochondrial Hsp60-Hsp10 double-ring complex (D7)

Method: ELECTRON MICROSCOPY D_max: 187.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9shj
deposition_date	2025-08-27
title	ATP-bound human mitochondrial Hsp60-Hsp10 double-ring complex (D7)
keywords	mitochondrial, D7-symmetry, CHAPERONE; CHAPERONE
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	62.99 Å
rg_electron	61.98 Å
i0	8614320000.00
molecular_weight	792530.0 kDa
excluded_volume	997550 Å³
envelope_volume	1549900 Å³
shell_volume	196290 Å³
envelope_diameter	189.4 Å
shell_rg	74.31 Å
envelope_rg	58.90 Å
shape_rg	62.01 Å
total_rg	62.10 Å
total_atoms	55440
n_residues	7378
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	187.5 Å
rg_real	62.32 Å
rg_real_error	0.88 Å
i0_real	8.6140e+09
i0_real_error	1.4490e+08
rg_reciprocal	63.54 Å
i0_reciprocal	8632000000.0000
total_estimate	0.8506
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	90.0 Å
skewness	-0.077
kurtosis	-0.497
angular_range	— – 0.1250 Å⁻¹
current_alpha	0.0000
highest_alpha	6659000000.0000
n_real_points	26
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.857; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.923; Smooth: 0.561

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (5)

Entity 1 polymer

description	60 kDa heat shock protein, mitochondrial
formula_weight	56134.4 kDa
ec_number	5.6.1.7
src_method	man
entity_count	14

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N
atom_count	56446

GSAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	14

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	14

Entity 4 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	14

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	1006

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	2.180 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.18 Å
resolution_method	—
num_particles	143570

fit	/app/data/saxs_computation/sh/9shj/9shj.fit
pddf	/app/data/pr_computation/sh/9shj/9shj.pr.out
profile	/app/data/saxs_computation/sh/9shj/9shj.dat