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9shk

ADP-bound human mitochondrial Hsp60 single ring complex (C7)

Method: ELECTRON MICROSCOPY D_max: 164.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9shk
deposition_date	2025-08-27
title	ADP-bound human mitochondrial Hsp60 single ring complex (C7)
keywords	mitochondrial, C7-symmetry, CHAPERONE; CHAPERONE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	56.88 Å
rg_electron	56.13 Å
i0	2166490000.00
molecular_weight	394530.0 kDa
excluded_volume	496640 Å³
envelope_volume	777990 Å³
shell_volume	111450 Å³
envelope_diameter	161.9 Å
shell_rg	65.32 Å
envelope_rg	52.69 Å
shape_rg	56.12 Å
total_rg	56.37 Å
total_atoms	27622
n_residues	3682
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	164.9 Å
rg_real	56.48 Å
rg_real_error	1.07 Å
i0_real	2.1660e+09
i0_real_error	3.9830e+07
rg_reciprocal	57.20 Å
i0_reciprocal	2169000000.0000
total_estimate	0.8305
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	88.3 Å
skewness	-0.111
kurtosis	-0.746
angular_range	— – 0.1400 Å⁻¹
current_alpha	0.0000
highest_alpha	166400000.0000
n_real_points	29
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.943; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.965; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	60 kDa heat shock protein, mitochondrial
formula_weight	56134.4 kDa
ec_number	5.6.1.7
src_method	man
entity_count	7

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G
atom_count	27629

GSAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	7

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	7

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	7

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.91 Å
resolution_method	—
num_particles	288807

fit	/app/data/saxs_computation/sh/9shk/9shk.fit
pddf	/app/data/pr_computation/sh/9shk/9shk.pr.out
profile	/app/data/saxs_computation/sh/9shk/9shk.dat