9sob

Structural Model of the Nuclear Pore Complex in Arabidopsis thaliana

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Nuclear pore complex protein NUP160

OrganismNot specified

UniProt Q9C811

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU160_ARATH
Isoform —
PDB entities 1
Chains and sequence ranges Author chain R; PDBConstruct 1–1495; UniProt 1–1495 Author chain R16; PDBConstruct 1–1495; UniProt 1–1495 Author chain R8; PDBConstruct 1–1495; UniProt 1–1495

Nuclear pore complex protein NUP96

OrganismNot specified

UniProt Q8LLD0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP96_ARATH
Isoform —
PDB entities 2
Chains and sequence ranges Author chain M; PDBConstruct 1–704; UniProt 343–1046 Author chain M16; PDBConstruct 1–704; UniProt 343–1046 Author chain M8; PDBConstruct 1–704; UniProt 343–1046

Protein transport protein SEC13 homolog B

OrganismNot specified

UniProt O64740

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SC13B_ARATH
Isoform —
PDB entities 3
Chains and sequence ranges Author chain N; PDBConstruct 1–302; UniProt 1–302 Author chain N16; PDBConstruct 1–302; UniProt 1–302 Author chain N8; PDBConstruct 1–302; UniProt 1–302

E3 ubiquitin-protein ligase HOS1

OrganismNot specified

UniProt Q84JU6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name HOS1_ARATH
Isoform —
PDB entities 4
Chains and sequence ranges Author chain T; PDBConstruct 1–684; UniProt 1–684 Author chain T16; PDBConstruct 1–684; UniProt 1–684 Author chain T8; PDBConstruct 1–684; UniProt 1–684

Nuclear pore complex protein NUP85

OrganismNot specified

UniProt Q8RXH2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP85_ARATH
Isoform —
PDB entities 5
Chains and sequence ranges Author chain P; PDBConstruct 1–716; UniProt 1–716 Author chain P16; PDBConstruct 1–716; UniProt 1–716 Author chain P8; PDBConstruct 1–716; UniProt 1–716

Protein SEH1

OrganismNot specified

UniProt Q93VR9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEH1_ARATH
Isoform —
PDB entities 6
Chains and sequence ranges Author chain O; PDBConstruct 1–326; UniProt 1–326 Author chain O16; PDBConstruct 1–326; UniProt 1–326 Author chain O8; PDBConstruct 1–326; UniProt 1–326

Nuclear pore complex protein NUP43

OrganismNot specified

UniProt Q24JJ9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP43_ARATH
Isoform —
PDB entities 7
Chains and sequence ranges Author chain Q; PDBConstruct 1–361; UniProt 1–361 Author chain Q16; PDBConstruct 1–361; UniProt 1–361 Author chain Q8; PDBConstruct 1–361; UniProt 1–361

Nuclear pore complex protein NUP107

OrganismNot specified

UniProt Q8L748

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU107_ARATH
Isoform —
PDB entities 8
Chains and sequence ranges Author chain L; PDBConstruct 1–977; UniProt 125–1101 Author chain L16; PDBConstruct 1–977; UniProt 125–1101 Author chain L8; PDBConstruct 1–977; UniProt 125–1101

Nuclear pore complex protein NUP133

OrganismNot specified

UniProt F4IGA5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU133_ARATH
Isoform —
PDB entities 9
Chains and sequence ranges Author chain K; PDBConstruct 1–709; UniProt 577–1285 Author chain K16; PDBConstruct 1–709; UniProt 577–1285 Author chain K8; PDBConstruct 1–709; UniProt 577–1285

Nuclear pore complex protein NUP205

OrganismNot specified

UniProt F4KBW6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU205_ARATH
Isoform —
PDB entities 10
Chains and sequence ranges Author chain C; PDBConstruct 1–1838; UniProt 1–1838 Author chain C16; PDBConstruct 1–1838; UniProt 1–1838 Author chain C24; PDBConstruct 1–1838; UniProt 1–1838 Author chain C32; PDBConstruct 1–1838; UniProt 1–1838 Author chain C8; PDBConstruct 1–1838; UniProt 1–1838

Nuclear pore complex protein NUP93A

OrganismNot specified

UniProt O22224

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NP93A_ARATH
Isoform —
PDB entities 11, 12, 16
Chains and sequence ranges Author chain A16; PDBConstruct 1–860; UniProt 1–860 Author chain A24; PDBConstruct 1–860; UniProt 1–860 Author chain A32; PDBConstruct 1–860; UniProt 1–860 Author chain A40; PDBConstruct 1–860; UniProt 1–860 Author chain A; PDBConstruct 1–763; UniProt 98–860 Author chain A48; PDBConstruct 1–763; UniProt 98–860 Author chain A8; PDBConstruct 1–63; UniProt 98–160

Nuclear pore complex protein NUP214

OrganismNot specified

UniProt F4I1T7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NP214_ARATH
Isoform —
PDB entities 13
Chains and sequence ranges Author chain V; PDBConstruct 1–196; UniProt 730–925

Nuclear pore complex protein NUP88

OrganismNot specified

UniProt Q9FFK6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP88_ARATH
Isoform —
PDB entities 14
Chains and sequence ranges Author chain W; PDBConstruct 1–810; UniProt 1–810

Nuclear pore complex protein NUP62

OrganismNot specified

UniProt Q8L7F7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP62_ARATH
Isoform —
PDB entities 15, 23
Chains and sequence ranges Author chain J; PDBConstruct 1–185; UniProt 540–724 Author chain J16; PDBConstruct 1–197; UniProt 543–739 Author chain J24; PDBConstruct 1–197; UniProt 543–739 Author chain J32; PDBConstruct 1–197; UniProt 543–739 Author chain J8; PDBConstruct 1–197; UniProt 543–739

Nuclear pore complex protein NUP35

OrganismNot specified

UniProt O04326

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP35_ARATH
Isoform —
PDB entities 17
Chains and sequence ranges Author chain F; PDBConstruct 1–28; UniProt 53–80 Author chain F16; PDBConstruct 1–28; UniProt 53–80 Author chain F24; PDBConstruct 1–28; UniProt 53–80 Author chain F8; PDBConstruct 1–28; UniProt 53–80

Nucleoporin (DUF3414)

OrganismNot specified

UniProt F4JUG3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F4JUG3_ARATH
Isoform —
PDB entities 18
Chains and sequence ranges Author chain B; PDBConstruct 1–1965; UniProt 1–1965 Author chain B8; PDBConstruct 1–1965; UniProt 1–1965

Aladin

OrganismNot specified

UniProt Q8GWR1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AAAS_ARATH
Isoform —
PDB entities 19
Chains and sequence ranges Author chain 4; PDBConstruct 1–447; UniProt 1–447 Author chain 48; PDBConstruct 1–447; UniProt 1–447

Nucleoporin protein Ndc1-Nup protein

OrganismNot specified

UniProt Q8LAF4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8LAF4_ARATH
Isoform —
PDB entities 20
Chains and sequence ranges Author chain E; PDBConstruct 1–519; UniProt 1–519 Author chain E8; PDBConstruct 1–519; UniProt 1–519

Nuclear pore complex protein NUP54

OrganismNot specified

UniProt Q8GYF7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Nuclear pore complex protein NUP155 × 90 (F4HXV6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP54_ARATH
Isoform —
PDB entities 21
Chains and sequence ranges Author chain H; PDBConstruct 1–254; UniProt 124–377 Author chain H16; PDBConstruct 1–254; UniProt 124–377 Author chain H24; PDBConstruct 1–254; UniProt 124–377 Author chain H8; PDBConstruct 1–254; UniProt 124–377

Nuclear pore complex protein NUP155

OrganismNot specified

UniProt F4HXV6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 1050 Nuclear pore complex protein NUP160 × 45 (Q9C811) Nuclear pore complex protein NUP96 × 45 (Q8LLD0) Protein transport protein SEC13 homolog B × 45 (O64740) E3 ubiquitin-protein ligase HOS1 × 45 (Q84JU6) Nuclear pore complex protein NUP85 × 45 (Q8RXH2) Protein SEH1 × 45 (Q93VR9) Nuclear pore complex protein NUP43 × 45 (Q24JJ9) Nuclear pore complex protein NUP107 × 45 (Q8L748) Nuclear pore complex protein NUP133 × 45 (F4IGA5) Nuclear pore complex protein NUP205 × 75 (F4KBW6) Nuclear pore complex protein NUP93A × 60 (O22224) Nuclear pore complex protein NUP93A × 30 (O22224) Nuclear pore complex protein NUP214 × 15 (F4I1T7) Nuclear pore complex protein NUP88 × 15 (Q9FFK6) Nuclear pore complex protein NUP62 × 15 (Q8L7F7) Nuclear pore complex protein NUP93A × 15 (O22224) Nuclear pore complex protein NUP35 × 60 (O04326) Nucleoporin (DUF3414) × 30 (F4JUG3) Aladin × 30 (Q8GWR1) Nucleoporin protein Ndc1-Nup protein × 30 (Q8LAF4) Nuclear pore complex protein NUP54 × 60 (Q8GYF7) NUP58 × 60 Nuclear pore complex protein NUP62 × 60 (Q8L7F7) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU155_ARATH
Isoform —
PDB entities 24
Chains and sequence ranges Author chain D; PDBConstruct 1–1464; UniProt 1–1464 Author chain D16; PDBConstruct 1–1464; UniProt 1–1464 Author chain D24; PDBConstruct 1–1464; UniProt 1–1464 Author chain D32; PDBConstruct 1–1464; UniProt 1–1464 Author chain D40; PDBConstruct 1–1464; UniProt 1–1464 Author chain D8; PDBConstruct 1–1464; UniProt 1–1464

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9sob
Deposition date deposition_date2025-09-12
Structure title titleStructural Model of the Nuclear Pore Complex in Arabidopsis thaliana
Keywords keywordsNuclear Pore Complex, Nuclear Transport, Nuclear-cytoplasmic transport, NUCLEAR PROTEIN; NUCLEAR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9sob__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9sob__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9sob__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)473.70 Å
Total Rg473.30 Å
Atom count3220488
Residues408944
Excluded volume57334000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9sob__assembly_1__model_1 1050-meric (1050) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (24)

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7. Citations (1)