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9t4a

Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1) in complex with 1,5-(PCP)-IP5 (PCP-IP8)

Method: X-RAY DIFFRACTION Dmax: 50.7 Å Quality: GOOD

SAXS Profile

SAXS profile for 9t4a

P(r) Distribution

P(r) distribution for 9t4a

1. Structure Basics

entry_id9t4a
deposition_date2025-10-30
last_revision2026-06-10
titleHuman Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1) in complex with 1,5-(PCP)-IP5 (PCP-IP8)
keywordsInositol metabolism, phosphatase, NUDIX hydrolases, DIPP1, IP8, HYDROLASE; HYDROLASE
methodX-RAY DIFFRACTION

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier15.91
rg_electron14.81
i07538850.00
molecular_weight18266.0 kDa
excluded_volume22125 ų
envelope_volume25483 ų
shell_volume14296 ų
envelope_diameter50.3
shell_rg21.05
envelope_rg15.25
shape_rg14.81
total_rg15.92
total_atoms1264
n_residues148
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax50.7
rg_real15.81
rg_real_error0.30
i0_real7.5390e+06
i0_real_error8.5910e+04
rg_reciprocal15.82
i0_reciprocal7539000.0000
total_estimate0.8168
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary19.9
skewness0.162
kurtosis-0.393
angular_range— – 0.5000 −1
current_alpha0.0000
highest_alpha1592000.0000
n_real_points80
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.872; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000

4. Crystallography & Experiment

5. Entities & Polymer Info (7)

6. Citations (1)

7. Files & Curves (10)