9tnq
L41 G-quadruplex-forming aptamers targeting HMGB1 protein
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9tnq |
| deposition_date | 2025-12-16 |
| last_revision | 2026-05-27 |
| title | L41 G-quadruplex-forming aptamers targeting HMGB1 protein |
| keywords | aptamer, HMGB1, G-quadruplex, DNA; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 10.90 Å |
| rg_electron | 10.69 Å |
| i0 | 282497000.00 |
| molecular_weight | 82436.0 kDa |
| excluded_volume | 78571 ų |
| envelope_volume | 12221 ų |
| shell_volume | 9237 ų |
| envelope_diameter | 35.6 Å |
| shell_rg | 16.91 Å |
| envelope_rg | 11.59 Å |
| shape_rg | 10.46 Å |
| total_rg | 11.19 Å |
| total_atoms | 8430 |
| n_residues | 260 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 33.8 Å |
| rg_real | 10.82 Å |
| rg_real_error | 0.20 Å |
| i0_real | 2.8250e+08 |
| i0_real_error | 2.7360e+06 |
| rg_reciprocal | 10.82 Å |
| i0_reciprocal | 282500000.0000 |
| total_estimate | 0.8891 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 13.3 Å |
| skewness | 0.128 |
| kurtosis | -0.422 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 768700.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.884; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.986; Smooth: 0.915 |