9tro
Factor VII Gla domain, X-ray structure
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9tro |
| deposition_date | 2025-12-25 |
| title | Factor VII Gla domain, X-ray structure |
| keywords | Factor VIIa; coagulation; hemophilia; bleeding; EPCR; complex, PROTEIN BINDING; PROTEIN BINDING |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.95 Å |
| rg_electron | 13.56 Å |
| i0 | 1825450.00 |
| molecular_weight | 8585.0 kDa |
| excluded_volume | 10305 ų |
| envelope_volume | 11717 ų |
| shell_volume | 7906 ų |
| envelope_diameter | 46.1 Å |
| shell_rg | 18.11 Å |
| envelope_rg | 13.66 Å |
| shape_rg | 13.57 Å |
| total_rg | 14.51 Å |
| total_atoms | 572 |
| n_residues | 45 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.8 Å |
| rg_real | 13.95 Å |
| rg_real_error | 0.25 Å |
| i0_real | 1.8250e+06 |
| i0_real_error | 1.8050e+04 |
| rg_reciprocal | 13.96 Å |
| i0_reciprocal | 1825000.0000 |
| total_estimate | 0.6785 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 3 |
| r_peak_primary | 11.8 Å |
| skewness | 0.180 |
| kurtosis | -0.736 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 412500.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.776; Stabil: 1.000; Sysdev: 0.256; Positv: 1.000; Valcen: 0.744; Smooth: 0.975 |