HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-dimer conformation

entry_id	9u5p
deposition_date	2025-03-21
title	HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-dimer conformation
keywords	cloverleafRNA, 3c, complex, RNA BINDING PROTEIN/RNA, RNA BINDING PROTEIN-RNA complex; RNA BINDING PROTEIN/RNA
method	ELECTRON MICROSCOPY

rg_guinier	33.90 Å
rg_electron	32.74 Å
i0	275396000.00
molecular_weight	113690.0 kDa
excluded_volume	134180 ų
envelope_volume	192210 ų
shell_volume	48755 ų
envelope_diameter	124.6 Å
shell_rg	39.58 Å
envelope_rg	32.39 Å
shape_rg	32.66 Å
total_rg	33.44 Å
total_atoms	7887
n_residues	901
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	116.8 Å
rg_real	33.80 Å
rg_real_error	0.85 Å
i0_real	2.7540e+08
i0_real_error	4.8110e+06
rg_reciprocal	33.86 Å
i0_reciprocal	275400000.0000
total_estimate	0.8657
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	42.3 Å
skewness	0.276
kurtosis	-0.174
angular_range	— – 0.2350 Å−1
current_alpha	0.0000
highest_alpha	27950000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.754; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.990

Unit Cell

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

Symmetry

space_group	P 1
int_tables_number	1
crystal_system	—

Refinement

resolution	2.960 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

EM 3D

resolution	2.96 Å
resolution_method	—
num_particles	292330

Files (7)

• pr_distribution /app/data/pr_computation/u5/9u5p/pr_distribution.json
• pr_output /app/data/pr_computation/u5/9u5p/9u5p.pr.out
• pr_plot /app/data/visualization/pr_computation/u5/9u5p/9u5p_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/u5/9u5p/9u5p.dat
• saxs_fit /app/data/saxs_computation/u5/9u5p/9u5p.fit
• saxs_log /app/data/saxs_computation/u5/9u5p/9u5p.log
• saxs_plot /app/data/visualization/saxs_computation/u5/9u5p/9u5p_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/u5/9u5p/9u5p.fit
pddf	/app/data/pr_computation/u5/9u5p/9u5p.pr.out
profile	/app/data/saxs_computation/u5/9u5p/9u5p.dat