← Back to search

9u6l

Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3C

Method: ELECTRON MICROSCOPY D_max: 97.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9u6l
deposition_date	2025-03-23
last_revision	2025-10-29
title	Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3C
keywords	ATP synthase, V ATPase, V1 ATPase, MOTOR PROTEIN; MOTOR PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	32.55 Å
rg_electron	31.38 Å
i0	186704000.00
molecular_weight	121290.0 kDa
excluded_volume	157630 Å³
envelope_volume	206130 Å³
shell_volume	52346 Å³
envelope_diameter	98.9 Å
shell_rg	40.31 Å
envelope_rg	31.06 Å
shape_rg	31.40 Å
total_rg	32.16 Å
total_atoms	8574
n_residues	1189
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	97.7 Å
rg_real	32.28 Å
rg_real_error	0.36 Å
i0_real	1.8670e+08
i0_real_error	2.7580e+06
rg_reciprocal	32.40 Å
i0_reciprocal	186700000.0000
total_estimate	0.8977
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	41.9 Å
skewness	0.085
kurtosis	-0.477
angular_range	— – 0.2450 Å⁻¹
current_alpha	0.0001
highest_alpha	17340000.0000
n_real_points	50
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.925; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.968; Smooth: 0.922

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	V-type ATP synthase subunit I
formula_weight	34679.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	N
atom_count	8574

AKPFELLVSFLNTPKYGTFDPTPVVPVFFPFWFGMIVGDIGYALLFYLVGRWLSGYVKRNEPLVIDLFALKLKPQVIGKLVHILNWMVFWTVVWGVIYGEFFGTFLEHLGVFGTPEHPGLIPILIHRIDTAKTANLLILLSVAFGVVLVFFGLALRAYLGLKHRHMAHFWEGVGYLGGLVGVLALAASYLGNLQAGWLQGLMYLGFGVFLLAVLMSRIWLMIPEIFTQAGHILSHIRIYAVGAAGGILAGLLTDVGFALAERLGLLGVLLGLLVAGVLHLLILLLTTLGHMLQPIRLLWVEFFTKFGFYEENG

Source

organism	Thermus thermophilus HB8
ncbi_taxonomy_id	300852
host_organism	Thermus thermophilus HB8

Entity 2 polymer

description	V-type ATP synthase, subunit K
formula_weight	7309.6 kDa
src_method	man
entity_count	12

Polymer

type	polypeptide(L)
strand_id	O,P,Q,R,S,T,U,V,W,X,Y,Z

SGGLDRGLIAVGMGLAVGLAALGTGVAQARIGAAGVGAIAEDRSNFGTALIFLLLPETLVIFGLLIAFILNGRL

Source

organism	Thermus thermophilus HB8
ncbi_taxonomy_id	300852
host_organism	Thermus thermophilus HB8

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	4.67 Å
resolution_method	—
num_particles	29264

fit	/app/data/saxs_computation/u6/9u6l/9u6l.fit
pddf	/app/data/pr_computation/u6/9u6l/9u6l.pr.out
profile	/app/data/saxs_computation/u6/9u6l/9u6l.dat

Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3C

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)