9u9m
;2,2'-bipyridine linked DNA oligomer (CGCGAAT[BrU]CGCG) in the presence of Ni2+ ion ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9u9m |
| deposition_date | 2025-03-28 |
| last_revision | 2026-04-01 |
| title | ;2,2'-bipyridine linked DNA oligomer (CGCGAAT[BrU]CGCG) in the presence of Ni2+ ion ; |
| keywords | DNA, oligomer; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.74 Å |
| rg_electron | 13.38 Å |
| i0 | 784989.00 |
| molecular_weight | 3721.0 kDa |
| excluded_volume | 3530 ų |
| envelope_volume | 5708 ų |
| shell_volume | 4225 ų |
| envelope_diameter | 43.3 Å |
| shell_rg | 16.87 Å |
| envelope_rg | 13.36 Å |
| shape_rg | 13.35 Å |
| total_rg | 14.01 Å |
| total_atoms | 243 |
| n_residues | 11 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 45.0 Å |
| rg_real | 13.85 Å |
| rg_real_error | 0.38 Å |
| i0_real | 7.8500e+05 |
| i0_real_error | 9.3600e+03 |
| rg_reciprocal | 13.85 Å |
| i0_reciprocal | 785000.0000 |
| total_estimate | 0.8327 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 9.7 Å |
| skewness | 0.264 |
| kurtosis | -0.841 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 22580.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.821; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.397; Smooth: 0.961 |