Crystal structure of a PhGs rhamnosyltransferase UGT79G15 from Rehmannia glutinosa

Method: X-RAY DIFFRACTION D_max: 126.8 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9uei
deposition_date	2025-04-08
title	Crystal structure of a PhGs rhamnosyltransferase UGT79G15 from Rehmannia glutinosa
keywords	catalysis, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.42 Å
rg_electron	36.38 Å
i0	145004000.00
molecular_weight	100160.0 kDa
excluded_volume	126690 Å³
envelope_volume	161780 Å³
shell_volume	39471 Å³
envelope_diameter	133.0 Å
shell_rg	39.45 Å
envelope_rg	36.47 Å
shape_rg	36.38 Å
total_rg	36.58 Å
total_atoms	7052
n_residues	900
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	126.8 Å
rg_real	36.87 Å
rg_real_error	1.40 Å
i0_real	1.4500e+08
i0_real_error	2.6840e+06
rg_reciprocal	36.59 Å
i0_reciprocal	145000000.0000
total_estimate	0.5574
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	35.4 Å
skewness	0.636
kurtosis	-0.162
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	29860000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.626; Stabil: 1.000; Sysdev: 0.048; Positv: 1.000; Valcen: 0.659; Smooth: 0.561

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	49.745 Å
length_b	71.970 Å
length_c	133.890 Å
angle_alpha	90.00 °
angle_beta	97.52 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.880 Å
resolution_low	44.370 Å
r_factor	0.1919
r_work	0.1902
r_free	0.2239

description	UGT79G15
formula_weight	50409.0 kDa
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	8024

Crystal structure of a PhGs rhamnosyltransferase UGT79G15 from Rehmannia glutinosa

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Rehmannia glutinosa
ncbi_taxonomy_id	99300
host_organism	;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ;

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	972

fit	/app/data/saxs_computation/ue/9uei/9uei.fit
pddf	/app/data/pr_computation/ue/9uei/9uei.pr.out
profile	/app/data/saxs_computation/ue/9uei/9uei.dat