SAXSdb — 9uhs

▼

1. Structure Basics

entry_id	9uhs
deposition_date	2025-04-14
title	Complete a6b6 of ATP-bound hPCC
keywords	carboxylase, TRANSFERASE; TRANSFERASE
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	66.24 Å
rg_electron	65.66 Å
i0	8831150000.00
molecular_weight	784470.0 kDa
excluded_volume	977930 Å³
envelope_volume	1416000 Å³
shell_volume	175150 Å³
envelope_diameter	221.2 Å
shell_rg	70.01 Å
envelope_rg	65.03 Å
shape_rg	65.64 Å
total_rg	65.78 Å
total_atoms	55016
n_residues	7086
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	250.0 Å
rg_real	69.76 Å
rg_real_error	1.77 Å
i0_real	8.8980e+09
i0_real_error	1.6940e+08
rg_reciprocal	66.49 Å
i0_reciprocal	8840000000.0000
total_estimate	0.8720
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	83.3 Å
skewness	0.612
kurtosis	0.605
angular_range	— – 0.1200 Å⁻¹
current_alpha	0.8089
highest_alpha	606100000.0000
n_real_points	25
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.647; Stabil: 0.871; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.871

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (8)

Entity 1 polymer

description	Propionyl-CoA carboxylase alpha chain, mitochondrial
formula_weight	80161.9 kDa
ec_number	6.4.1.3
src_method	man
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,C,H,K,O,R
atom_count	55016

MAGFWVGTAPLVAAGRRGRWPPQQLMLSAALRTLKHVLYYSRQCLMVSRNLGSVGYDPNEKTFDKILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQKVVEEAPSIFLDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNTRLQVEHPVTECITGLDLVQEMIRVAKGYPLRHKQADIRINGWAVECRVYAEDPYKSFGLPSIGRLSQYQEPLHLPGVRVDSGIQPGSDISIYYDPMISKLITYGSDRTEALKRMADALDNYVIRGVTHNIALLREVIINSRFVKGDISTKFLSDVYPDGFKGHMLTKSEKNQLLAIASSLFVAFQLRAQHFQENSRMPVIKPDIANWELSVKLHDKVHTVVASNNGSVFSVEVDGSKLNVTSTWNLASPLLSVSVDGTQRTVQCLSREAGGNMSIQFLGTVYKVNILTRLAAELNKFMLEKVTEDTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 polymer

description	Propionyl-CoA carboxylase beta chain, mitochondrial
formula_weight	27095.2 kDa
ec_number	6.4.1.3
src_method	man
entity_count	6

Polymer

type	polypeptide(L)
strand_id	B,D,I,L,P,S

DPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 3 polymer

description	Propionyl-CoA carboxylase beta chain, mitochondrial
formula_weight	31207.5 kDa
ec_number	6.4.1.3
src_method	man
entity_count	6

Polymer

type	polypeptide(L)
strand_id	F,G,J,M,Q,T

MAAALRVAAVGARLSVLASGLRAAVRSLCSQATSVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFFNYLPLSSQDPAPVRECH

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 4 non-polymer

description	BIOTIN
formula_weight	244.3 kDa
src_method	syn
entity_count	6

Entity 5 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	6

Entity 6 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	6

Entity 7 non-polymer

description	propionyl Coenzyme A
formula_weight	823.6 kDa
src_method	syn
entity_count	6

Entity 8 non-polymer

description	BICARBONATE ION
formula_weight	61.0 kDa
src_method	syn
entity_count	2

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.760 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.76 Å
resolution_method	—
num_particles	94565

fit	/app/data/saxs_computation/uh/9uhs/9uhs.fit
pddf	/app/data/pr_computation/uh/9uhs/9uhs.pr.out
profile	/app/data/saxs_computation/uh/9uhs/9uhs.dat

Complete a6b6 of ATP-bound hPCC

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (8)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 non-polymer

Entity 8 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)