9ujq
Cryo-EM structure of HQY1027-bound alpha-synuclein fibril polymorph 6A6B
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ujq |
| deposition_date | 2025-04-17 |
| title | Cryo-EM structure of HQY1027-bound alpha-synuclein fibril polymorph 6A6B |
| keywords | amyloid fibril, complex, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 28.42 Å |
| rg_electron | 28.58 Å |
| i0 | 22903300.00 |
| molecular_weight | 37369.0 kDa |
| excluded_volume | 47285 ų |
| envelope_volume | 62227 ų |
| shell_volume | 20119 ų |
| envelope_diameter | 113.6 Å |
| shell_rg | 32.13 Å |
| envelope_rg | 29.02 Å |
| shape_rg | 28.60 Å |
| total_rg | 28.95 Å |
| total_atoms | 2628 |
| n_residues | 378 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 111.2 Å |
| rg_real | 28.72 Å |
| rg_real_error | 1.36 Å |
| i0_real | 2.2900e+07 |
| i0_real_error | 4.1420e+05 |
| rg_reciprocal | 28.63 Å |
| i0_reciprocal | 22900000.0000 |
| total_estimate | 0.7988 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 27.8 Å |
| skewness | 0.495 |
| kurtosis | -0.121 |
| angular_range | — – 0.2800 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1274000.0000 |
| n_real_points | 57 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.646; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.447; Smooth: 0.996 |