SAXSdb — 9uln

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1. Structure Basics

entry_id	9uln
deposition_date	2025-04-20
last_revision	2026-04-22
title	Mogamulizumab Fab fragment
keywords	mogamulizumab, CCR4, antibody, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.79 Å
rg_electron	26.77 Å
i0	62354800.00
molecular_weight	60393.0 kDa
excluded_volume	75034 Å³
envelope_volume	93957 Å³
shell_volume	29350 Å³
envelope_diameter	89.5 Å
shell_rg	33.98 Å
envelope_rg	26.49 Å
shape_rg	26.74 Å
total_rg	27.62 Å
total_atoms	4254
n_residues	558
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	85.4 Å
rg_real	27.69 Å
rg_real_error	0.52 Å
i0_real	6.2350e+07
i0_real_error	8.6130e+05
rg_reciprocal	27.73 Å
i0_reciprocal	62360000.0000
total_estimate	0.9127
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	35.9 Å
skewness	0.160
kurtosis	-0.606
angular_range	— – 0.2850 Å⁻¹
current_alpha	0.0000
highest_alpha	12580000.0000
n_real_points	58
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.972; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.946

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	heavy chain
formula_weight	24809.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4254

EVQLVESGGDLVQPGRSLRLSCAASGFIFSNYGMSWVRQAPGKGLEWVATISSASTYSYYPDSVKGRFTISRDNAKNSLYLQMNSLRVEDTALYYCGRHSDGNFAFGYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHH

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 polymer

description	light chain
formula_weight	24117.9 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

DVLMTQSPLSLPVTPGEPASISCRSSRNIVHINGDTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSLLPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 3 polymer

description	anti-kappa VHH
formula_weight	14365.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	K

MQVQLQESGGGLVQPGGSLRLSCAASGRTISSYAMSWFRQAPGKEREFVATARRSGDGAFYADSVQGRFTVSRDNAKNTVYLQMNSLKPEDTAVYYCAVDSDTFYSGSYDYWGQGTQVTVSSLEHHHHHH

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

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6. Citations (1)

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length_a	110.022 Å
length_b	110.022 Å
length_c	120.971 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.940 Å
resolution_low	32.520 Å
r_factor	0.2258
r_work	0.2231
r_free	0.2760

fit	/app/data/saxs_computation/ul/9uln/9uln.fit
pddf	/app/data/pr_computation/ul/9uln/9uln.pr.out
profile	/app/data/saxs_computation/ul/9uln/9uln.dat

Mogamulizumab Fab fragment

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)