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9ulx

crystal structure of apo AbGHMP

Method: X-RAY DIFFRACTION D_max: 124.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9ulx
deposition_date	2025-04-21
last_revision	2026-04-29
title	crystal structure of apo AbGHMP
keywords	arabinokinase, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	39.26 Å
rg_electron	38.71 Å
i0	367762000.00
molecular_weight	154630.0 kDa
excluded_volume	192780 Å³
envelope_volume	253670 Å³
shell_volume	54367 Å³
envelope_diameter	126.4 Å
shell_rg	44.74 Å
envelope_rg	38.40 Å
shape_rg	38.74 Å
total_rg	38.95 Å
total_atoms	10888
n_residues	1449
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	124.8 Å
rg_real	39.19 Å
rg_real_error	1.00 Å
i0_real	3.6780e+08
i0_real_error	5.3430e+06
rg_reciprocal	39.24 Å
i0_reciprocal	367800000.0000
total_estimate	0.8849
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	43.7 Å
skewness	0.211
kurtosis	-0.613
angular_range	— – 0.2000 Å⁻¹
current_alpha	0.0000
highest_alpha	59980000.0000
n_real_points	41
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.946; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.666

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	AbGHMP
formula_weight	53874.7 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	A,B,C
atom_count	11206

MFRITHGSTLGLPDVEAFLHTLNTVEQNPATRGLFDPAGEIIVARAPGRLDVMGGIADYSGSLVLEMPIREATFVALQRASDRQLKLVSLSEDSTEALHFEMPLADFDHAGEPISYETARSYFKRDPAQHWAAYVAGVFLVLMRERGAQFTEGARLLIASRVPQGKGVSSSAALEVATMNAVANAFGISLAPRETALLCQKVENLVAGAPCGVMDQMTSVWGETNQLLALLCQPAELQSAVSIPDEISFWGIDSGIRHAVTGSDYGSVRVGAFMGYRMIAELAGLPVTDGDPVQIVDLRWSGYLSNLTPSQFEQMYAEKLPERISGAEFLARYGGTTDAITRVEPDRSYAVRVPTGHPIYEHHRVRLFAELLSARITERQLAERGLACLGELMYQSHASYSACGLGSTATDRLVELAREAGPSEGIYGAKITGGGSGGTVAVFGRREAAPAIVRIAERYAGEAGYQPYIFSGSSPGGATFGHLRLRPNEFLEHHHHHH

Source

organism	Acidobacteriota
ncbi_taxonomy_id	57723
host_organism	Escherichia coli

Entity 2 non-polymer

description	ACETATE ION
formula_weight	59.0 kDa
src_method	syn
entity_count	2

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	318

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6. Citations (1)

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length_a	125.840 Å
length_b	143.177 Å
length_c	194.198 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.160 Å
resolution_low	62.920 Å
r_factor	0.1878
r_work	0.1860
r_free	0.2216

fit	/app/data/saxs_computation/ul/9ulx/9ulx.fit
pddf	/app/data/pr_computation/ul/9ulx/9ulx.pr.out
profile	/app/data/saxs_computation/ul/9ulx/9ulx.dat

crystal structure of apo AbGHMP

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction