9utw

Structure of dimeric FKS1 in complex with tRNA

Method: ELECTRON MICROSCOPY Dmax: 213.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Uncharacterized protein YMR295C

OrganismNot specified

UniProt Q03559

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 4 RNA 1 其他Polymer 2 PDB declaration: pentameric(5) Count mismatch; review required Chain C; UniProt 1–197 Chain G; UniProt 1–197 Not recorded 1,3-beta-glucan synthase component FKS1 × 2 (P38631) tRNA × 1 beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose × 1 beta-D-glucopyranose-(1-3)-beta-D-glucopyranose × 1 MG MAGNESIUM ION × 2 DD9 nonane × 8 D10 DECANE × 2 HP6 HEPTANE × 6 XKP (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 2 PEF DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE × 2 PLM PALMITIC ACID × 16 DCR icosanoic acid × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 8 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.96 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

5 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name YM8V_YEAST
Isoform
PDB entities 1
Chains and sequence ranges Author chain C; PDBConstruct 1–197; UniProt 1–197 Author chain G; PDBConstruct 1–197; UniProt 1–197

1,3-beta-glucan synthase component FKS1

OrganismNot specified

UniProt P38631

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 4 RNA 1 其他Polymer 2 PDB declaration: pentameric(5) Count mismatch; review required Chain B; UniProt 1–1876 Chain H; UniProt 1–1876 Not recorded Uncharacterized protein YMR295C × 2 (Q03559) tRNA × 1 beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose × 1 beta-D-glucopyranose-(1-3)-beta-D-glucopyranose × 1 MG MAGNESIUM ION × 2 DD9 nonane × 8 D10 DECANE × 2 HP6 HEPTANE × 6 XKP (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate × 2 PEF DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE × 2 PLM PALMITIC ACID × 16 DCR icosanoic acid × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 8 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.96 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name FKS1_YEAST
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–1876; UniProt 1–1876 Author chain H; PDBConstruct 1–1876; UniProt 1–1876

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9utw

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9utw
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9utw
Deposition date deposition_date2025-05-05
Structure title titleStructure of dimeric FKS1 in complex with tRNA
Keywords keywordsMEMBRANE PROTEIN-RNA COMPLEX, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier62.06
Radius of gyration Rg (electron density) rg_electron63.71
Forward intensity I(0) i01718560000.00
Molecular weight molecular_weight361590.0 kDa
Excluded volume excluded_volume457520 ų
Envelope volume envelope_volume751370 ų
Hydration-shell volume shell_volume101240 ų
Envelope diameter envelope_diameter200.4
Shell Rg shell_rg61.24
Envelope Rg envelope_rg60.96
Shape Rg shape_rg63.78
Total Rg total_rg63.39
Total atoms total_atoms25408
Residues n_residues2930
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax213.9
Rg (real space) rg_real62.34
Rg uncertainty (real space) rg_real_error2.15
I(0) (real space) i0_real1.7190e+09
I(0) uncertainty (real space) i0_real_error3.5490e+07
Rg (reciprocal space) rg_reciprocal61.75
I(0) (reciprocal space) i0_reciprocal1717000000.0000
Solution quality estimate total_estimate0.8496
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary59.9
Skewness Skewness skewness0.325
Kurtosis Kurtosis kurtosis-0.786
Angular range angular_range— – 0.1250 −1
Current regularization parameter α current_alpha0.0011
Highest regularization parameter α highest_alpha153700000.0000
Real-space data points n_real_points26
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.745; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.822

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (13)

8. Citations (1)

9. Files and Curves (10)