SAXSdb — 9uv4

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1. Structure Basics

entry_id	9uv4
deposition_date	2025-05-09
title	Structure of MHV68 glycoprotein B in complex with Fab5
keywords	MHV68, gB, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM complex; VIRAL PROTEIN/IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	57.93 Å
rg_electron	57.75 Å
i0	802467000.00
molecular_weight	222830.0 kDa
excluded_volume	272650 Å³
envelope_volume	505210 Å³
shell_volume	77622 Å³
envelope_diameter	179.2 Å
shell_rg	53.18 Å
envelope_rg	56.83 Å
shape_rg	57.80 Å
total_rg	57.41 Å
total_atoms	15814
n_residues	2280
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	168.9 Å
rg_real	57.98 Å
rg_real_error	1.50 Å
i0_real	8.0250e+08
i0_real_error	1.5500e+07
rg_reciprocal	57.84 Å
i0_reciprocal	802300000.0000
total_estimate	0.8451
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	68.8 Å
skewness	0.240
kurtosis	-0.671
angular_range	— – 0.1350 Å⁻¹
current_alpha	0.0000
highest_alpha	41900000.0000
n_real_points	28
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.996; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Fab 5 H chain
formula_weight	24199.9 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	I,J,K
atom_count	15814

QVQLQQPGAELVRPGASVKLSCKASGFTFTSYWINWVKQRPGQGLEWIGNIFPSDSYTNYNQKFKDKATLTVDKSSSTAYMLLSSPTSEDSAVYYCTRGGYRYDSDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVGSHHHHHH

Source

organism	Mus musculus
ncbi_taxonomy_id	10090
host_organism	Homo sapiens

Entity 2 polymer

description	Fab5 L chain
formula_weight	23261.8 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	M,N,O

QIVLTQSPAIMSASPGEKVTMTCSASSSVTYMYWYQQKPGSSPRLLIYDTSNLASGVPVRFSGSGSGTSYSLTISRMEAEDAATYYCQQWSSYPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Mus musculus
ncbi_taxonomy_id	10090
host_organism	Homo sapiens

Entity 3 polymer

description	MHV 68 glycoprotein B
formula_weight	74919.8 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	A,B,C

MYPTVKSMRVAHLTNLLTLLCLLCHTHLYVCQPTTLRQPSDMTPAQDAPTETPPPLSTNTNRGFEYFRVCGVAATGETFRFDLDKTCPSTQDKKHVEGILLVYKINIVPYIFKIRRYRKIITQLTIWRGHRTSSVTGKFEMATQAHEWEVGDFDSIYQCYNSATMVVNNVRQVYVDRDGVNKTVNIRPVDGLTGNIQRYFSQPTLYSEPGRVEATYRVRTTVNCEIVDMVARSMDPYNYIATALGDSLELSPFQTFDNTSQSTAPKRADMRVREVKNYKFVDYNNRGTAPAGQSRTFLETPSATYSWKTATRQTATCDLVHWKTFPRAIQTAHEHSYHFVANEVTATFNTPLTEVENFTSTYSCVSDQINKTISEYIQKLNNSYVASGKTQYFKTDGNLYLIWQPLEHPEIEDIDEDSDPEPTPAPPKSTGGSGEAADNGNSTSEVSKGSENPLITAQIQFAYDKLTTSVNNVLEELSRAWCREQVRDTLMWYELSKVNPTSVMSAIYGKPVAARYVGDAISVTDCIYVDQSSVNIHQSLRLQHDKTTCYSRPRVTFKFINSTDPLTGQLGPRKEIILSNTNIETCKDESEHYFIVGEYIYYYKNYIFEEKLNLSSIATLDTFIALNISFIENIDFKTVELYSSTERKLASSHHHHHH

Source

organism	Murid herpesvirus 68
ncbi_taxonomy_id	1440122
host_organism	Homo sapiens

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6. Citations (1)

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resolution	3.30 Å
resolution_method	—
num_particles	116763

fit	/app/data/saxs_computation/uv/9uv4/9uv4.fit
pddf	/app/data/pr_computation/uv/9uv4/9uv4.pr.out
profile	/app/data/saxs_computation/uv/9uv4/9uv4.dat

Structure of MHV68 glycoprotein B in complex with Fab5

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)