Structure of MHV68 glycoprotein B

Method: ELECTRON MICROSCOPY D_max: 163.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9uvc
deposition_date	2025-05-09
title	Structure of MHV68 glycoprotein B
keywords	MHV68, gB, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	50.73 Å
rg_electron	50.08 Å
i0	404210000.00
molecular_weight	156710.0 kDa
excluded_volume	192150 Å³
envelope_volume	351770 Å³
shell_volume	62275 Å³
envelope_diameter	173.6 Å
shell_rg	47.84 Å
envelope_rg	50.34 Å
shape_rg	50.19 Å
total_rg	49.61 Å
total_atoms	11116
n_residues	1572
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	163.7 Å
rg_real	51.11 Å
rg_real_error	1.78 Å
i0_real	4.0420e+08
i0_real_error	7.8160e+06
rg_reciprocal	50.40 Å
i0_reciprocal	403800000.0000
total_estimate	0.7934
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	52.8 Å
skewness	0.578
kurtosis	-0.340
angular_range	— – 0.1550 Å⁻¹
current_alpha	0.0000
highest_alpha	30370000.0000
n_real_points	32
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.791; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.913; Smooth: 0.026

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.300 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.30 Å
resolution_method	—
num_particles	109332

description	Murid herpesvirus 68 glycoprotein B
formula_weight	74919.8 kDa
src_method	man
entity_count	3

Structure of MHV68 glycoprotein B

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Murid gammaherpesvirus 4
ncbi_taxonomy_id	33708
host_organism	Homo sapiens

fit	/app/data/saxs_computation/uv/9uvc/9uvc.fit
pddf	/app/data/pr_computation/uv/9uvc/9uvc.pr.out
profile	/app/data/saxs_computation/uv/9uvc/9uvc.dat

type	polypeptide(L)
strand_id	A,B,C
atom_count	11116