;Crystal structure of 2'-dG-III riboswitch with Guanosine, manganese saok ;

entry_id	9uw0
deposition_date	2025-05-11
last_revision	2025-08-20
title	;Crystal structure of 2'-dG-III riboswitch with Guanosine, manganese saok ;
keywords	;Riboswitch, 2'-dG, RNA, Guanosine ;; RNA
method	X-RAY DIFFRACTION

rg_guinier	19.04 Å
rg_electron	18.65 Å
i0	24255200.00
molecular_weight	21783.0 kDa
excluded_volume	20189 ų
envelope_volume	29232 ų
shell_volume	14432 ų
envelope_diameter	67.5 Å
shell_rg	23.24 Å
envelope_rg	18.46 Å
shape_rg	18.54 Å
total_rg	19.22 Å
total_atoms	1417
n_residues	63
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	66.8 Å
rg_real	19.11 Å
rg_real_error	0.44 Å
i0_real	2.4260e+07
i0_real_error	2.6840e+05
rg_reciprocal	19.10 Å
i0_reciprocal	24260000.0000
total_estimate	0.8551
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	20.4 Å
skewness	0.469
kurtosis	-0.178
angular_range	— – 0.4200 Å−1
current_alpha	0.0000
highest_alpha	2052000.0000
n_real_points	73
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.758; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.854; Smooth: 0.985

Unit Cell

length_a	47.206 Å
length_b	70.365 Å
length_c	116.266 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	I 2 2 2
int_tables_number	23
crystal_system	—

Refinement

resolution	1.970 Å
resolution_low	32.500 Å
r_factor	0.2063
r_work	0.2054
r_free	0.2229

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/uw/9uw0/pr_distribution.json
• pr_output /app/data/pr_computation/uw/9uw0/9uw0.pr.out
• pr_plot /app/data/visualization/pr_computation/uw/9uw0/9uw0_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/uw/9uw0/9uw0.dat
• saxs_fit /app/data/saxs_computation/uw/9uw0/9uw0.fit
• saxs_log /app/data/saxs_computation/uw/9uw0/9uw0.log
• saxs_plot /app/data/visualization/saxs_computation/uw/9uw0/9uw0_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/uw/9uw0/9uw0.fit
pddf	/app/data/pr_computation/uw/9uw0/9uw0.pr.out
profile	/app/data/saxs_computation/uw/9uw0/9uw0.dat