9v4z
Crystal structure of Guanine-II riboswitch in complex with 8-oxoguanine
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9v4z |
| deposition_date | 2025-05-24 |
| last_revision | 2025-11-26 |
| title | Crystal structure of Guanine-II riboswitch in complex with 8-oxoguanine |
| keywords | guanine riboswitch, RNA; RNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 20.14 Å |
| rg_electron | 19.86 Å |
| i0 | 27644100.00 |
| molecular_weight | 23310.0 kDa |
| excluded_volume | 21662 ų |
| envelope_volume | 32277 ų |
| shell_volume | 15081 ų |
| envelope_diameter | 71.8 Å |
| shell_rg | 24.08 Å |
| envelope_rg | 19.51 Å |
| shape_rg | 19.75 Å |
| total_rg | 20.39 Å |
| total_atoms | 1534 |
| n_residues | 70 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 70.8 Å |
| rg_real | 20.23 Å |
| rg_real_error | 0.58 Å |
| i0_real | 2.7640e+07 |
| i0_real_error | 3.6280e+05 |
| rg_reciprocal | 20.22 Å |
| i0_reciprocal | 27640000.0000 |
| total_estimate | 0.8550 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 20.2 Å |
| skewness | 0.477 |
| kurtosis | -0.194 |
| angular_range | — – 0.3950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2262000.0000 |
| n_real_points | 71 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.752; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.871; Smooth: 0.987 |