9v7p
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) intron conformation after the self-splicing
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9v7p |
| deposition_date | 2025-05-28 |
| title | Cryo-EM structures of the Azoarcus pre-tRNA(ILE) intron conformation after the self-splicing |
| keywords | Azoarcus pre-tRNA(ILE), self-splicing, pre-1S, RNA structure, RNA; RNA |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 29.48 Å |
| rg_electron | 29.43 Å |
| i0 | 215858000.00 |
| molecular_weight | 67512.0 kDa |
| excluded_volume | 62788 ų |
| envelope_volume | 97477 ų |
| shell_volume | 29692 ų |
| envelope_diameter | 111.9 Å |
| shell_rg | 33.98 Å |
| envelope_rg | 29.52 Å |
| shape_rg | 29.38 Å |
| total_rg | 29.74 Å |
| total_atoms | 4453 |
| n_residues | 206 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 106.6 Å |
| rg_real | 29.63 Å |
| rg_real_error | 1.09 Å |
| i0_real | 2.1590e+08 |
| i0_real_error | 3.8200e+06 |
| rg_reciprocal | 29.56 Å |
| i0_reciprocal | 215800000.0000 |
| total_estimate | 0.8453 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 33.6 Å |
| skewness | 0.538 |
| kurtosis | 0.065 |
| angular_range | — – 0.2700 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 5873000.0000 |
| n_real_points | 55 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.702; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.922; Smooth: 0.958 |