9va9
Crystal structure of the PDZ tandem of syntenin
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9va9 |
| deposition_date | 2025-06-03 |
| title | Crystal structure of the PDZ tandem of syntenin |
| keywords | Syntenin-1, PDZ domain, SIGNALING PROTEIN; SIGNALING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 22.80 Å |
| rg_electron | 21.87 Å |
| i0 | 22340700.00 |
| molecular_weight | 35895.0 kDa |
| excluded_volume | 45064 ų |
| envelope_volume | 54794 ų |
| shell_volume | 21240 ų |
| envelope_diameter | 83.1 Å |
| shell_rg | 28.25 Å |
| envelope_rg | 22.16 Å |
| shape_rg | 21.86 Å |
| total_rg | 22.76 Å |
| total_atoms | 2518 |
| n_residues | 330 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 78.2 Å |
| rg_real | 22.78 Å |
| rg_real_error | 0.61 Å |
| i0_real | 2.2340e+07 |
| i0_real_error | 3.0970e+05 |
| rg_reciprocal | 22.79 Å |
| i0_reciprocal | 22340000.0000 |
| total_estimate | 0.6198 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 3 |
| r_peak_primary | 22.5 Å |
| skewness | 0.307 |
| kurtosis | -0.335 |
| angular_range | — – 0.3500 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 10920000.0000 |
| n_real_points | 67 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.786; Stabil: 0.998; Sysdev: 0.242; Positv: 1.000; Valcen: 0.974; Smooth: 0.000 |