9vac
Crystal structure of the PDZ tandem of syntenin
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vac |
| deposition_date | 2025-06-03 |
| title | Crystal structure of the PDZ tandem of syntenin |
| keywords | Syntenin-1, PDZ domain, SIGNALING PROTEIN; SIGNALING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 22.88 Å |
| rg_electron | 21.93 Å |
| i0 | 22609600.00 |
| molecular_weight | 36204.0 kDa |
| excluded_volume | 45436 ų |
| envelope_volume | 55039 ų |
| shell_volume | 21303 ų |
| envelope_diameter | 83.1 Å |
| shell_rg | 28.22 Å |
| envelope_rg | 22.27 Å |
| shape_rg | 21.92 Å |
| total_rg | 22.79 Å |
| total_atoms | 2540 |
| n_residues | 332 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 78.4 Å |
| rg_real | 22.86 Å |
| rg_real_error | 0.63 Å |
| i0_real | 2.2610e+07 |
| i0_real_error | 3.1980e+05 |
| rg_reciprocal | 22.87 Å |
| i0_reciprocal | 22610000.0000 |
| total_estimate | 0.7928 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 22.9 Å |
| skewness | 0.321 |
| kurtosis | -0.312 |
| angular_range | — – 0.3450 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 11900000.0000 |
| n_real_points | 66 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.781; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.959; Smooth: 0.000 |