9vaf
Crystal structure of the PDZ tandem of syntenin
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vaf |
| deposition_date | 2025-06-03 |
| title | Crystal structure of the PDZ tandem of syntenin |
| keywords | Syntenin-1, PDZ domain, SIGNALING PROTEIN; SIGNALING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 22.85 Å |
| rg_electron | 21.89 Å |
| i0 | 22511500.00 |
| molecular_weight | 36059.0 kDa |
| excluded_volume | 45279 ų |
| envelope_volume | 54654 ų |
| shell_volume | 21192 ų |
| envelope_diameter | 83.2 Å |
| shell_rg | 28.21 Å |
| envelope_rg | 22.24 Å |
| shape_rg | 21.87 Å |
| total_rg | 22.77 Å |
| total_atoms | 2530 |
| n_residues | 331 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 82.0 Å |
| rg_real | 22.83 Å |
| rg_real_error | 0.68 Å |
| i0_real | 2.2510e+07 |
| i0_real_error | 3.3560e+05 |
| rg_reciprocal | 22.84 Å |
| i0_reciprocal | 22510000.0000 |
| total_estimate | 0.8506 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 23.6 Å |
| skewness | 0.318 |
| kurtosis | -0.312 |
| angular_range | — – 0.3500 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 11190000.0000 |
| n_real_points | 67 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.715; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.931; Smooth: 0.978 |