9vai
Crystal structure of the PDZ tandem of syntenin
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vai |
| deposition_date | 2025-06-03 |
| title | Crystal structure of the PDZ tandem of syntenin |
| keywords | Syntenin-1, PDZ domain, SIGNALING PROTEIN; SIGNALING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 22.89 Å |
| rg_electron | 21.91 Å |
| i0 | 22329900.00 |
| molecular_weight | 35895.0 kDa |
| excluded_volume | 45064 ų |
| envelope_volume | 54295 ų |
| shell_volume | 21052 ų |
| envelope_diameter | 78.8 Å |
| shell_rg | 28.23 Å |
| envelope_rg | 22.17 Å |
| shape_rg | 21.90 Å |
| total_rg | 22.79 Å |
| total_atoms | 2518 |
| n_residues | 330 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 79.6 Å |
| rg_real | 22.87 Å |
| rg_real_error | 0.63 Å |
| i0_real | 2.2330e+07 |
| i0_real_error | 2.9650e+05 |
| rg_reciprocal | 22.88 Å |
| i0_reciprocal | 22330000.0000 |
| total_estimate | 0.7044 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 23.3 Å |
| skewness | 0.308 |
| kurtosis | -0.342 |
| angular_range | — – 0.3450 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 10420000.0000 |
| n_real_points | 66 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.780; Stabil: 1.000; Sysdev: 0.307; Positv: 1.000; Valcen: 0.947; Smooth: 0.946 |