9vun
Crystal structure of the DNA/RNA hybrid, D(CGTCTCCAGGCAAC)/R(GUUGCCUGGAGACG)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vun |
| deposition_date | 2025-07-13 |
| last_revision | 2026-02-11 |
| title | Crystal structure of the DNA/RNA hybrid, D(CGTCTCCAGGCAAC)/R(GUUGCCUGGAGACG) |
| keywords | DNA/RNA hybrid, DNA-RNA HYBRID; DNA-RNA HYBRID |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.19 Å |
| rg_electron | 13.73 Å |
| i0 | 4009100.00 |
| molecular_weight | 8735.0 kDa |
| excluded_volume | 8314 ų |
| envelope_volume | 11539 ų |
| shell_volume | 7968 ų |
| envelope_diameter | 46.4 Å |
| shell_rg | 17.90 Å |
| envelope_rg | 13.54 Å |
| shape_rg | 13.63 Å |
| total_rg | 14.44 Å |
| total_atoms | 579 |
| n_residues | 28 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.9 Å |
| rg_real | 14.20 Å |
| rg_real_error | 0.35 Å |
| i0_real | 4.0090e+06 |
| i0_real_error | 4.6730e+04 |
| rg_reciprocal | 14.20 Å |
| i0_reciprocal | 4009000.0000 |
| total_estimate | 0.8602 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.6 Å |
| skewness | 0.344 |
| kurtosis | -0.236 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 125800.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.733; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.984; Smooth: 0.999 |