Crystal structure of the apo form of HisMab-1 Fab

entry_id	9vx2
deposition_date	2025-07-18
title	Crystal structure of the apo form of HisMab-1 Fab
keywords	Fab, HisMab-1, His-tag, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

rg_guinier	36.15 Å
rg_electron	35.73 Å
i0	149314000.00
molecular_weight	94629.0 kDa
excluded_volume	116880 ų
envelope_volume	156750 ų
shell_volume	38576 ų
envelope_diameter	121.1 Å
shell_rg	40.00 Å
envelope_rg	35.07 Å
shape_rg	35.73 Å
total_rg	36.01 Å
total_atoms	6637
n_residues	850
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	118.3 Å
rg_real	36.31 Å
rg_real_error	1.17 Å
i0_real	1.4930e+08
i0_real_error	2.7290e+06
rg_reciprocal	36.22 Å
i0_reciprocal	149300000.0000
total_estimate	0.8794
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	35.0 Å
skewness	0.360
kurtosis	-0.651
angular_range	— – 0.2200 Å−1
current_alpha	0.0000
highest_alpha	13910000.0000
n_real_points	45
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.878; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.895; Smooth: 0.899

Unit Cell

length_a	73.719 Å
length_b	191.099 Å
length_c	177.383 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

Symmetry

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

Refinement

resolution	2.390 Å
resolution_low	48.200 Å
r_factor	0.2344
r_work	0.2315
r_free	0.2884

Diffraction

temperature

95.0 K

Files (7)

• pr_distribution /app/data/pr_computation/vx/9vx2/pr_distribution.json
• pr_output /app/data/pr_computation/vx/9vx2/9vx2.pr.out
• pr_plot /app/data/visualization/pr_computation/vx/9vx2/9vx2_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/vx/9vx2/9vx2.dat
• saxs_fit /app/data/saxs_computation/vx/9vx2/9vx2.fit
• saxs_log /app/data/saxs_computation/vx/9vx2/9vx2.log
• saxs_plot /app/data/visualization/saxs_computation/vx/9vx2/9vx2_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/vx/9vx2/9vx2.fit
pddf	/app/data/pr_computation/vx/9vx2/9vx2.pr.out
profile	/app/data/saxs_computation/vx/9vx2/9vx2.dat