Butyryl CoA dehydrogenase

Method: X-RAY DIFFRACTION D_max: 96.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9w60
deposition_date	2025-08-03
last_revision	2025-12-10
title	Butyryl CoA dehydrogenase
keywords	Apo protein, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.78 Å
rg_electron	29.30 Å
i0	114054000.00
molecular_weight	84940.0 kDa
excluded_volume	106600 Å³
envelope_volume	129270 Å³
shell_volume	36851 Å³
envelope_diameter	100.7 Å
shell_rg	36.47 Å
envelope_rg	29.60 Å
shape_rg	29.31 Å
total_rg	29.91 Å
total_atoms	5946
n_residues	778
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	96.8 Å
rg_real	29.86 Å
rg_real_error	0.74 Å
i0_real	1.1410e+08
i0_real_error	1.9000e+06
rg_reciprocal	29.83 Å
i0_reciprocal	114100000.0000
total_estimate	0.8741
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	31.1 Å
skewness	0.449
kurtosis	-0.338
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	38430000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.851; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.823

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	100.398 Å
length_b	100.398 Å
length_c	163.832 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.800 Å
resolution_low	48.000 Å
r_factor	0.2288
r_work	0.2233
r_free	0.2811

description	Butyryl CoA dehydrogenase apo protein
formula_weight	42518.9 kDa
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	6087

Butyryl CoA dehydrogenase

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Faecalibacterium prausnitzii L2-6
ncbi_taxonomy_id	718252
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	141

fit	/app/data/saxs_computation/w6/9w60/9w60.fit
pddf	/app/data/pr_computation/w6/9w60/9w60.pr.out
profile	/app/data/saxs_computation/w6/9w60/9w60.dat