9wb3

HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1-composite-1

Method: ELECTRON MICROSCOPY Dmax: 118.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Protease 3C

rhinovirus B14

UniProt P03303

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 3 RNA 1 PDB declaration: tetrameric(4) Consistent with all polymer counts Chain A; UniProt 1539–1718 Not recorded YDF heavy chain × 1 YDF light chain × 1 RNA (83-MER) × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 8 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.17 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

58 other PDB entries and 240 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name POLG_HRV14
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–180; UniProt 1539–1718

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9wb3

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9wb3
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9wb3
Deposition date deposition_date2025-08-13
Structure title titleHRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1-composite-1
Keywords keywordscloverleafRNA, 3c, ydf, RNA BINDING PROTEIN/RNA/IMMUNE SYSTEM, RNA BINDING PROTEIN-RNA-IMMUNE SYSTEM complex; RNA BINDING PROTEIN/RNA/IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier33.73
Radius of gyration Rg (electron density) rg_electron32.76
Forward intensity I(0) i0119278000.00
Molecular weight molecular_weight68685.0 kDa
Excluded volume excluded_volume78074 ų
Envelope volume envelope_volume116220 ų
Hydration-shell volume shell_volume31537 ų
Envelope diameter envelope_diameter123.8
Shell Rg shell_rg36.74
Envelope Rg envelope_rg32.72
Shape Rg shape_rg32.65
Total Rg total_rg33.32
Total atoms total_atoms4722
Residues n_residues486
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax118.5
Rg (real space) rg_real33.91
Rg uncertainty (real space) rg_real_error1.16
I(0) (real space) i0_real1.1930e+08
I(0) uncertainty (real space) i0_real_error2.1000e+06
Rg (reciprocal space) rg_reciprocal33.80
I(0) (reciprocal space) i0_reciprocal119300000.0000
Solution quality estimate total_estimate0.8528
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary32.8
Skewness Skewness skewness0.458
Kurtosis Kurtosis kurtosis-0.320
Angular range angular_range— – 0.2350 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha7394000.0000
Real-space data points n_real_points48
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.811; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.729; Smooth: 0.922

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)