HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1-composite-1

entry_id	9wb3
deposition_date	2025-08-13
title	HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1-composite-1
keywords	cloverleafRNA, 3c, ydf, RNA BINDING PROTEIN/RNA/IMMUNE SYSTEM, RNA BINDING PROTEIN-RNA-IMMUNE SYSTEM complex; RNA BINDING PROTEIN/RNA/IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

rg_guinier	33.73 Å
rg_electron	32.76 Å
i0	119278000.00
molecular_weight	68685.0 kDa
excluded_volume	78074 ų
envelope_volume	116220 ų
shell_volume	31537 ų
envelope_diameter	123.8 Å
shell_rg	36.74 Å
envelope_rg	32.72 Å
shape_rg	32.65 Å
total_rg	33.32 Å
total_atoms	4722
n_residues	486
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	118.5 Å
rg_real	33.91 Å
rg_real_error	1.16 Å
i0_real	1.1930e+08
i0_real_error	2.1000e+06
rg_reciprocal	33.80 Å
i0_reciprocal	119300000.0000
total_estimate	0.8528
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	32.8 Å
skewness	0.458
kurtosis	-0.320
angular_range	— – 0.2350 Å−1
current_alpha	0.0000
highest_alpha	7394000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.811; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.729; Smooth: 0.922

Unit Cell

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

Symmetry

space_group	P 1
int_tables_number	1
crystal_system	—

Refinement

resolution	3.170 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

EM 3D

resolution	3.17 Å
resolution_method	—
num_particles	357917

Files (7)

• pr_distribution /app/data/pr_computation/wb/9wb3/pr_distribution.json
• pr_output /app/data/pr_computation/wb/9wb3/9wb3.pr.out
• pr_plot /app/data/visualization/pr_computation/wb/9wb3/9wb3_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/wb/9wb3/9wb3.dat
• saxs_fit /app/data/saxs_computation/wb/9wb3/9wb3.fit
• saxs_log /app/data/saxs_computation/wb/9wb3/9wb3.log
• saxs_plot /app/data/visualization/saxs_computation/wb/9wb3/9wb3_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/wb/9wb3/9wb3.fit
pddf	/app/data/pr_computation/wb/9wb3/9wb3.pr.out
profile	/app/data/saxs_computation/wb/9wb3/9wb3.dat