9y2z
Icosahedral symmetric structure of an expansion intermediate of Turnip Crinkle Virus (Asymmetric Trimer Unit)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9y2z |
| deposition_date | 2025-09-01 |
| title | Icosahedral symmetric structure of an expansion intermediate of Turnip Crinkle Virus (Asymmetric Trimer Unit) |
| keywords | Icosahedral non-enveloped ssRNA virus, Expansion intermediate, VIRUS; VIRUS |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 32.86 Å |
| rg_electron | 31.98 Å |
| i0 | 130194000.00 |
| molecular_weight | 88350.0 kDa |
| excluded_volume | 109880 ų |
| envelope_volume | 160800 ų |
| shell_volume | 41711 ų |
| envelope_diameter | 115.5 Å |
| shell_rg | 39.01 Å |
| envelope_rg | 31.47 Å |
| shape_rg | 31.95 Å |
| total_rg | 32.69 Å |
| total_atoms | 6230 |
| n_residues | 842 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 109.2 Å |
| rg_real | 32.64 Å |
| rg_real_error | 0.91 Å |
| i0_real | 1.3020e+08 |
| i0_real_error | 2.5380e+06 |
| rg_reciprocal | 32.74 Å |
| i0_reciprocal | 130200000.0000 |
| total_estimate | 0.8777 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 43.2 Å |
| skewness | 0.117 |
| kurtosis | -0.372 |
| angular_range | — – 0.2400 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 14620000.0000 |
| n_real_points | 49 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.805; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.991 |