9y31
Symmetry relaxed asymmetric structure of an expansion intermediate of Turnip crinkle virus
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9y31 |
| deposition_date | 2025-09-01 |
| title | Symmetry relaxed asymmetric structure of an expansion intermediate of Turnip crinkle virus |
| keywords | Icosahedral non-enveloped ssRNA virus, Expansion intermediate, VIRAL PROTEIN; VIRAL PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 20.27 Å |
| rg_electron | 19.62 Å |
| i0 | 821819.00 |
| molecular_weight | 6141.0 kDa |
| excluded_volume | 7807 ų |
| envelope_volume | 12241 ų |
| shell_volume | 6634 ų |
| envelope_diameter | 69.4 Å |
| shell_rg | 22.33 Å |
| envelope_rg | 20.59 Å |
| shape_rg | 19.66 Å |
| total_rg | 20.21 Å |
| total_atoms | 433 |
| n_residues | 57 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 70.5 Å |
| rg_real | 20.50 Å |
| rg_real_error | 0.87 Å |
| i0_real | 8.2180e+05 |
| i0_real_error | 1.3090e+04 |
| rg_reciprocal | 20.46 Å |
| i0_reciprocal | 821800.0000 |
| total_estimate | 0.8045 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 21.1 Å |
| skewness | 0.389 |
| kurtosis | -0.574 |
| angular_range | — – 0.3900 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 58090.0000 |
| n_real_points | 71 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.647; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.526; Smooth: 0.988 |