9ybj
[2UDS] Double crossover-like DNA motif containing a mobile junction
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ybj |
| deposition_date | 2025-09-17 |
| last_revision | 2025-10-22 |
| title | [2UDS] Double crossover-like DNA motif containing a mobile junction |
| keywords | dna, dxl, crossover, mobile; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 15.67 Å |
| rg_electron | 15.25 Å |
| i0 | 4846950.00 |
| molecular_weight | 9793.0 kDa |
| excluded_volume | 9459 ų |
| envelope_volume | 14159 ų |
| shell_volume | 8764 ų |
| envelope_diameter | 49.7 Å |
| shell_rg | 19.34 Å |
| envelope_rg | 15.27 Å |
| shape_rg | 15.13 Å |
| total_rg | 15.98 Å |
| total_atoms | 650 |
| n_residues | 32 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 50.1 Å |
| rg_real | 15.68 Å |
| rg_real_error | 0.34 Å |
| i0_real | 4.8470e+06 |
| i0_real_error | 5.9210e+04 |
| rg_reciprocal | 15.68 Å |
| i0_reciprocal | 4847000.0000 |
| total_estimate | 0.8997 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.5 Å |
| skewness | 0.293 |
| kurtosis | -0.479 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 255200.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.913; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.970; Smooth: 0.982 |