9ybk
[2ULA] Double crossover-like L-DNA motif containing a mobile junction
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ybk |
| deposition_date | 2025-09-17 |
| last_revision | 2025-10-22 |
| title | [2ULA] Double crossover-like L-DNA motif containing a mobile junction |
| keywords | dna, dxl, crossover, mobile; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 15.54 Å |
| rg_electron | 15.11 Å |
| i0 | 6237040.00 |
| molecular_weight | 9394.0 kDa |
| excluded_volume | 7348 ų |
| envelope_volume | 13872 ų |
| shell_volume | 8680 ų |
| envelope_diameter | 50.6 Å |
| shell_rg | 19.32 Å |
| envelope_rg | 15.20 Å |
| shape_rg | 15.02 Å |
| total_rg | 15.71 Å |
| total_atoms | 651 |
| n_residues | — |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 52.7 Å |
| rg_real | 15.55 Å |
| rg_real_error | 0.36 Å |
| i0_real | 6.2370e+06 |
| i0_real_error | 6.7910e+04 |
| rg_reciprocal | 15.55 Å |
| i0_reciprocal | 6237000.0000 |
| total_estimate | 0.8767 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.0 Å |
| skewness | 0.297 |
| kurtosis | -0.491 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 292200.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.827; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.911; Smooth: 0.999 |