9yh9
Crystal structure of a phage catechol 1,2-dioxygenase identified from a soil metagenomic survey
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yh9 |
| deposition_date | 2025-09-30 |
| title | Crystal structure of a phage catechol 1,2-dioxygenase identified from a soil metagenomic survey |
| keywords | ;SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, Catechol 1, 2-deoxygenase, metagenome, phage, OXIDOREDUCTASE ;; OXIDOREDUCTASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 23.85 Å |
| rg_electron | 22.84 Å |
| i0 | 27332600.00 |
| molecular_weight | 38423.0 kDa |
| excluded_volume | 47308 ų |
| envelope_volume | 57504 ų |
| shell_volume | 21544 ų |
| envelope_diameter | 79.6 Å |
| shell_rg | 29.05 Å |
| envelope_rg | 23.05 Å |
| shape_rg | 22.84 Å |
| total_rg | 23.60 Å |
| total_atoms | 2710 |
| n_residues | 343 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 79.9 Å |
| rg_real | 23.88 Å |
| rg_real_error | 0.57 Å |
| i0_real | 2.7330e+07 |
| i0_real_error | 4.0390e+05 |
| rg_reciprocal | 23.88 Å |
| i0_reciprocal | 27330000.0000 |
| total_estimate | 0.6864 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 78.7 Å |
| skewness | 0.338 |
| kurtosis | -0.528 |
| angular_range | — – 0.3350 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 5118000.0000 |
| n_real_points | 65 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.847; Stabil: 1.000; Sysdev: 0.154; Positv: 1.000; Valcen: 0.925; Smooth: 0.992 |