Sf11 bacteriophage portal

Method: ELECTRON MICROSCOPY D_max: 111.4 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9yin
deposition_date	2025-10-01
title	Sf11 bacteriophage portal
keywords	Sf11, bacteriophage, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.61 Å
rg_electron	30.53 Å
i0	31128200.00
molecular_weight	42112.0 kDa
excluded_volume	52272 Å³
envelope_volume	76959 Å³
shell_volume	23592 Å³
envelope_diameter	109.2 Å
shell_rg	33.00 Å
envelope_rg	32.09 Å
shape_rg	30.49 Å
total_rg	30.93 Å
total_atoms	2964
n_residues	382
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	111.4 Å
rg_real	32.40 Å
rg_real_error	0.53 Å
i0_real	3.1340e+07
i0_real_error	4.4630e+05
rg_reciprocal	30.91 Å
i0_reciprocal	31120000.0000
total_estimate	0.5889
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	27.9 Å
skewness	0.668
kurtosis	-0.216
angular_range	— – 0.2600 Å⁻¹
current_alpha	3.1860
highest_alpha	2959000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.629; Stabil: 0.889; Sysdev: 0.000; Positv: 1.000; Valcen: 0.436; Smooth: 0.685

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.400 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.40 Å
resolution_method	—
num_particles	20482

description	Sf11 portal
formula_weight	52372.4 kDa
src_method	man
entity_count	1

Sf11 bacteriophage portal

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Shigella phage Sf11 SMD-2017
ncbi_taxonomy_id	2282196
host_organism	Shigella flexneri Y

fit	/app/data/saxs_computation/yi/9yin/9yin.fit
pddf	/app/data/pr_computation/yi/9yin/9yin.pr.out
profile	/app/data/saxs_computation/yi/9yin/9yin.dat

type	polypeptide(L)
strand_id	A
atom_count	2964