9ylv
Cryo-EM structure of apo CbCash dodecamer
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ylv |
| deposition_date | 2025-10-09 |
| title | Cryo-EM structure of apo CbCash dodecamer |
| keywords | tRNA endonuclease, cA4 activation, CRISPR associated Schlafen, Csx15, RNA BINDING PROTEIN; RNA BINDING PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 54.46 Å |
| rg_electron | 53.85 Å |
| i0 | 2241020000.00 |
| molecular_weight | 398720.0 kDa |
| excluded_volume | 500750 ų |
| envelope_volume | 761510 ų |
| shell_volume | 114580 ų |
| envelope_diameter | 165.3 Å |
| shell_rg | 61.16 Å |
| envelope_rg | 51.28 Å |
| shape_rg | 53.86 Å |
| total_rg | 54.02 Å |
| total_atoms | 28020 |
| n_residues | 3540 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 164.7 Å |
| rg_real | 54.14 Å |
| rg_real_error | 0.82 Å |
| i0_real | 2.2410e+09 |
| i0_real_error | 3.8480e+07 |
| rg_reciprocal | 54.71 Å |
| i0_reciprocal | 2243000000.0000 |
| total_estimate | 0.8861 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 73.8 Å |
| skewness | -0.006 |
| kurtosis | -0.624 |
| angular_range | — – 0.1450 Å−1 |
| current_alpha | 0.0001 |
| highest_alpha | 187700000.0000 |
| n_real_points | 30 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.952; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.963; Smooth: 0.696 |