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9ynz

;Human PU.1 ETS-Domain (165-270) Bound to d(5'-AATAAGCGGAAGTGGG-3') d(5'-TCCCACTCPDCGCTTAT-3') ;

Method: X-RAY DIFFRACTION D_max: 55.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9ynz
deposition_date	2025-10-13
last_revision	2025-10-22
title	;Human PU.1 ETS-Domain (165-270) Bound to d(5'-AATAAGCGGAAGTGGG-3') d(5'-TCCCACTCPDCGCTTAT-3') ;
keywords	transcription factor, protein-DNA complex, ETS family, ETS, PU.1, TRANSCRIPTION-DNA complex, DNA mismatch, TRANSCRIPTION; TRANSCRIPTION
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	17.29 Å
rg_electron	16.10 Å
i0	11909700.00
molecular_weight	20062.0 kDa
excluded_volume	22635 Å³
envelope_volume	28167 Å³
shell_volume	14886 Å³
envelope_diameter	56.8 Å
shell_rg	21.86 Å
envelope_rg	16.40 Å
shape_rg	16.02 Å
total_rg	17.08 Å
total_atoms	2495
n_residues	120
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	55.3 Å
rg_real	17.21 Å
rg_real_error	0.31 Å
i0_real	1.1910e+07
i0_real_error	1.3940e+05
rg_reciprocal	17.22 Å
i0_reciprocal	11910000.0000
total_estimate	0.8236
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	20.4 Å
skewness	0.175
kurtosis	-0.449
angular_range	— – 0.4600 Å⁻¹
current_alpha	0.0000
highest_alpha	1319000.0000
n_real_points	77
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.901; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	;DNA (5'-D(APAPTPAPAPGPCPGPGPAPAPGPTPGPGPG)-3') ;
formula_weight	5036.3 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	C
atom_count	2566

AATAAGCGGAAGTGGG

Entity 2 polymer

description	;DNA (5'-D(PCPCPCPAPCPT(CPD)PCPGPCPTPTPAPT)-3') ;
formula_weight	4775.1 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	D

TCCCACTTCGCTTAT

Entity 3 polymer

description	Transcription factor PU.1
formula_weight	12436.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	F

GSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFSGEVLGRGGLAERRHPPH

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	71

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6. Citations (1)

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length_a	42.966 Å
length_b	58.879 Å
length_c	45.925 Å
angle_alpha	90.00 °
angle_beta	117.59 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	monoclinic

resolution	2.050 Å
resolution_low	23.850 Å
r_factor	0.2103
r_work	0.2063
r_free	0.2440

fit	/app/data/saxs_computation/yn/9ynz/9ynz.fit
pddf	/app/data/pr_computation/yn/9ynz/9ynz.pr.out
profile	/app/data/saxs_computation/yn/9ynz/9ynz.dat

;Human PU.1 ETS-Domain (165-270) Bound to d(5'-AATAAGCGGAAGTGGG-3') d(5'-TCCCACTCPDCGCTTAT-3') ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

;Human PU.1 ETS-Domain (165-270) Bound to d(5'-AATAAGCGGAAGTGGG-3') d(5'-TCCCACT*CPD*CGCTTAT-3') ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

;Human PU.1 ETS-Domain (165-270) Bound to d(5'-AATAAGCGGAAGTGGG-3') d(5'-TCCCACTCPDCGCTTAT-3') ;