IGHV4-34 germline-reverted antibody pre166

entry_id	9yy0
deposition_date	2025-10-28
last_revision	2026-02-11
title	IGHV4-34 germline-reverted antibody pre166
keywords	cold agglutinin self-reactive antibody, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

rg_guinier	25.08 Å
rg_electron	24.04 Å
i0	34489600.00
molecular_weight	45081.0 kDa
excluded_volume	56187 ų
envelope_volume	68998 ų
shell_volume	23987 ų
envelope_diameter	77.2 Å
shell_rg	30.99 Å
envelope_rg	23.65 Å
shape_rg	24.03 Å
total_rg	24.87 Å
total_atoms	6232
n_residues	420
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	75.8 Å
rg_real	25.01 Å
rg_real_error	0.51 Å
i0_real	3.4490e+07
i0_real_error	5.2430e+05
rg_reciprocal	25.04 Å
i0_reciprocal	34490000.0000
total_estimate	0.9157
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	30.1 Å
skewness	0.176
kurtosis	-0.634
angular_range	— – 0.3150 Å−1
current_alpha	0.0000
highest_alpha	5788000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.985; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.952

Unit Cell

length_a	61.463 Å
length_b	47.093 Å
length_c	71.154 Å
angle_alpha	90.00 °
angle_beta	114.38 °
angle_gamma	90.00 °
z_pdb	2

Symmetry

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

Refinement

resolution	1.340 Å
resolution_low	38.100 Å
r_factor	0.2257
r_work	0.2243
r_free	0.2525

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/yy/9yy0/pr_distribution.json
• pr_output /app/data/pr_computation/yy/9yy0/9yy0.pr.out
• pr_plot /app/data/visualization/pr_computation/yy/9yy0/9yy0_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/yy/9yy0/9yy0.dat
• saxs_fit /app/data/saxs_computation/yy/9yy0/9yy0.fit
• saxs_log /app/data/saxs_computation/yy/9yy0/9yy0.log
• saxs_plot /app/data/visualization/saxs_computation/yy/9yy0/9yy0_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/yy/9yy0/9yy0.fit
pddf	/app/data/pr_computation/yy/9yy0/9yy0.pr.out
profile	/app/data/saxs_computation/yy/9yy0/9yy0.dat